DRSC/TRiP Functional Genomics Resources

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Protein Alignment EcR and Pparg

DIOPT Version :10

Sequence 1:NP_724460.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_035276.2 Gene:Pparg / 19016 MGIID:97747 Length:505 Species:Mus musculus


Alignment Length:414 Identity:114/414 - (27%)
Similarity:179/414 - (43%) Gaps:78/414 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   264 CLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVY-CCKFGRACEMDMYMRRKCQECRLKKCLAV 327
            |.||||:|||:||....||||||||||::....:| .|...  |.:....|.|||.||.:|||||
Mouse   139 CRVCGDKASGFHYGVHACEGCKGFFRRTIRLKLIYDRCDLN--CRIHKKSRNKCQYCRFQKCLAV 201

  Fly   328 GMRPECVVPENQCAMKRREKKAQKEKDKMTTSPSSQHGGNGSLASGGGQDFVKKEILDLMTCEPP 392
            ||....:         |..:..|.||:|:....||.            .|.:..|..||...  .
Mouse   202 GMSHNAI---------RFGRMPQAEKEKLLAEISSD------------IDQLNPESADLRAL--A 243

  Fly   393 QHATIPLLPDEILAKCQARNI--PSLTYNQLAVIYKLIWYQDGYEQPSEEDLRRIMSQPDENESQ 455
            :|.....:....|.|.:||.|  ...|.....|||               |:..:|...|:    
Mouse   244 KHLYDSYIKSFPLTKAKARAILTGKTTDKSPFVIY---------------DMNSLMMGEDK---- 289

  Fly   456 TDVSFRHITEI------------------TILTVQLIVEFAKGLPAFTKIPQEDQITLLKACSSE 502
              :.|:|||.:                  ::..||.|.|:||.:|.|..:...||:||||....|
Mouse   290 --IKFKHITPLQEQSKEVAIRIFQGCQFRSVEAVQEITEYAKNIPGFINLDLNDQVTLLKYGVHE 352

  Fly   503 VMMLRMARRYDHSSDSIFFANNRSY-TRDSYK--MAGMADNIEDLLHFCRQMFSMKVDNVEYALL 564
            ::...:|...  :.|.:..:..:.: ||:..|  .....|.:|....|..:..::::|:.:.|:.
Mouse   353 IIYTMLASLM--NKDGVLISEGQGFMTREFLKSLRKPFGDFMEPKFEFAVKFNALELDDSDLAIF 415

  Fly   565 TAIVIFS-DRPGLEKAQLVEAIQSYYIDTLRIYILNRHCGDSMSLVFYAKLLSILTELRTLGNQN 628
            .|::|.| |||||...:.:|.||...:..|.:.:...|...|.   .:||:|..:|:||.:..::
Mouse   416 IAVIILSGDRPGLLNVKPIEDIQDNLLQALELQLKLNHPESSQ---LFAKVLQKMTDLRQIVTEH 477

  Fly   629 AEMCFSLKL--KNRKLPKFLEEIW 650
            .::...:|.  .:..|...|:||:
Mouse   478 VQLLHVIKKTETDMSLHPLLQEIY 501

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_724460.1 NR_DBD_EcR 261..351 CDD:143535 37/87 (43%)
NR_LBD_EcR 420..652 CDD:132736 60/255 (24%)
PpargNP_035276.2 PPARgamma_N 31..108 CDD:463633
NR_DBD_Ppar 138..221 CDD:143523 40/92 (43%)
Interaction with FAM120B. /evidence=ECO:0000269|PubMed:17595322 205..280 21/112 (19%)
NR_LBD_PPAR 237..504 CDD:132730 69/293 (24%)
9aaTAD. /evidence=ECO:0000250|UniProtKB:P37231 495..503 3/7 (43%)
Blue background indicates that the domain is not in the aligned region.

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