DRSC/TRiP Functional Genomics Resources

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Protein Alignment EcR and nhr-217

DIOPT Version :10

Sequence 1:NP_724460.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_493122.2 Gene:nhr-217 / 188330 WormBaseID:WBGene00011651 Length:383 Species:Caenorhabditis elegans


Alignment Length:407 Identity:77/407 - (18%)
Similarity:137/407 - (33%) Gaps:107/407 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   218 SDSVNSISSGRDDLSPSS--SLNGYSANESCDAKKSK---------KGPAPRVQEELCLVCGDRA 271
            |:.::.||....|.||:|  ::......|.|...|..         |.||..|.:..|.:     
 Worm     6 SNMLDRISGLSKDASPNSTTTIQEIITLEKCLTSKVSALFLICKMLKIPACPVCDVPCRI----- 65

  Fly   272 SGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECRLKKCLAVGMRPECVVP 336
             ..|:..:.|..|..||||:|:.:..|.||..:.|..   .|:.|:.||.::|:           
 Worm    66 -EPHFGGIACAACAAFFRRTVSLNIGYMCKREKLCRK---ARKSCRACRFERCV----------- 115

  Fly   337 ENQCAMKRREKKAQKEKD--KMTTSPSSQHGGNGSLASGGGQDFVKKEILDLMTCEPPQHATIPL 399
                      |.|..::|  :...:|.     |..|.....||....||:.....        |.
 Worm   116 ----------KSAGLQRDYVRQLLTPR-----NTPLYILNRQDNTGGEIVRAFAS--------PT 157

  Fly   400 LPDEILAKCQARNIPSLTYNQLAVIYKLIWYQDGYEQPSEEDLRRIMSQPDENESQTDVSFRHIT 464
            :|       :....|.|.::.:..:             |...|.:...    |:.:..|..|...
 Worm   158 MP-------KPEPTPQLGFSDILKV-------------SNSSLFKFYL----NQVEKAVKLRQKN 198

  Fly   465 EITILT-----------VQLIVEFAKGLPAFTKIPQEDQITLLKACSSEVMMLRMARRYDHSSDS 518
            .:||.|           .:|.:|..:..|....:.:||:..:.|......:.:.....|..:.:.
 Worm   199 TLTIKTNAELLKIVATQQELALEACRTCPGMDLLDKEDRKVVQKYFVFSNVWIESTWLYSLAKEH 263

  Fly   519 IFFANNRSYTRDSYKMAGMADNIEDLLHFCRQMFSMKVDNVEYALLTAIVIF------SDRPGLE 577
            :...||.::   ...:....:.::..|.|....|.:.:  .|.|...||.|:      :.|....
 Worm   264 LETENNLNF---DINLKKFIEQVKSTLLFSFSQFKLNI--FELAAFKAICIWKLIYHETSRAMKI 323

  Fly   578 KAQ-----LVEAIQSYY 589
            .||     :..|:::||
 Worm   324 IAQEHYDGVASALRNYY 340

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_724460.1 NR_DBD_EcR 261..351 CDD:143535 20/89 (22%)
NR_LBD_EcR 420..652 CDD:132736 31/192 (16%)
nhr-217NP_493122.2 NR_DBD_like 56..116 CDD:413390 19/89 (21%)
HOLI 215..368 CDD:214658 23/131 (18%)

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