DRSC/TRiP Functional Genomics Resources

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Protein Alignment EcR and nhr-272

DIOPT Version :10

Sequence 1:NP_724460.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_510122.1 Gene:nhr-272 / 188209 WormBaseID:WBGene00011565 Length:334 Species:Caenorhabditis elegans


Alignment Length:387 Identity:81/387 - (20%)
Similarity:134/387 - (34%) Gaps:115/387 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   264 CLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVY-CCKFGRACEMDMYMRR---KCQECRLKKC 324
            |:|||.....:.|....|..|..|||||:|..:.: .||....|..:...|:   ||:.||..||
 Worm     7 CVVCGVSTHLFKYGKYLCNSCDLFFRRSMTPWSFFGDCKHNWDCYKESSNRQRLPKCRHCRFNKC 71

  Fly   325 LAVGMRPECVVPENQCAMKRREK-----------KAQKEKDKMTTSPSSQHGGNGSLASGGGQDF 378
            :.||:          ..:.|..|           .|.:||..:..|.|:....|..|.....: |
 Worm    72 VDVGL----------LTVSRYTKLADLVEYLSLLDANREKTFLKLSISTDFDTNTFLDENPIR-F 125

  Fly   379 VKKEILDLMTCEPPQHATIPLLPDEILAKCQARNIPSLTYNQLAVIYKLIWYQDGYEQPSEEDLR 443
            :||                   ..::...|....|    .|:|:.| :::...|..:..|.:|||
 Worm   126 IKK-------------------TSDLNFDCDEWQI----MNKLSTI-EMLKNLDFPKYLSSQDLR 166

  Fly   444 RIMSQPDENESQTDVSFRHITEITILTVQLIVEFAKGLPAFTKIPQEDQITLLKACSSEVMMLRM 508
            ..:.:.                          .|.||:                        |.|
 Worm   167 YFLKKG--------------------------YFLKGI------------------------LTM 181

  Fly   509 A-RRYDHSSDSIFFANNRSYTRDSYKMAGMADNIEDL-LHFCR---QMFSMKVDNVEYALLTAIV 568
            | |.|.:..:.:.|.|......| :...|:..||..| |..|:   :...:|:...|.::|.||.
 Worm   182 AMRSYLNQEEFMSFPNGVDLFPD-HAREGLHINISFLNLIRCQLVGKFIELKITREEISMLGAIA 245

  Fly   569 IFSDR-PGLEK--AQLVEAIQSYYIDTLRIYILNRHCGDSMSLVFYAKLLSILTELRTLGNQ 627
            :.:.. |.|..  .:|:...|..|..:|..|.|.::..:..:.  :..::|:|    .:.||
 Worm   246 VSNPAVPDLSSNGQKLLSCYQQLYTSSLLQYCLAKYQQNGPAR--FCNIMSVL----NVANQ 301

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_724460.1 NR_DBD_EcR 261..351 CDD:143535 28/101 (28%)
NR_LBD_EcR 420..652 CDD:132736 41/216 (19%)
nhr-272NP_510122.1 ZnF_C4 7..75 CDD:197701 23/67 (34%)
HOLI 145..302 CDD:214658 41/215 (19%)

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