DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment EcR and nhr-196

DIOPT Version :10

Sequence 1:NP_724460.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_506900.2 Gene:nhr-196 / 187053 WormBaseID:WBGene00010600 Length:340 Species:Caenorhabditis elegans


Alignment Length:408 Identity:82/408 - (20%)
Similarity:140/408 - (34%) Gaps:114/408 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   271 ASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECRLKKCLAVGMRPECVV 335
            |:..:|..|:|..||.||.||...:.:|.|:....|..:.....||:.||.:||..|||:     
 Worm     2 ATSRNYGVLSCFACKMFFYRSSKNNLIYKCRNINQCFQNYNSPIKCRACRFRKCQKVGMK----- 61

  Fly   336 PENQCAMKRREKKAQKEKDKMTTSPSSQHGGNGSLASGGGQDFVKKEILDLMTCEPPQHATIPLL 400
                                                           :|.|.|..|.....:.:|
 Worm    62 -----------------------------------------------LLTLKTSLPDLDNDLNIL 79

  Fly   401 PDEILAKCQARNIPSLTYNQLAVIYKLIWYQDGYEQPSEEDLRRIMSQPDENESQTDVSFRHITE 465
                .|..:.|:  |..::.....|.:       |.||..|:.        |.:.|....:...|
 Worm    80 ----FADLEIRD--SSNHSIFLNFYSM-------EDPSLVDVL--------NNANTMHLIKRTPE 123

  Fly   466 ITILTVQ--LIVEFAK--GLPAFTKIPQ---EDQITLLKACSSEVM----MLRMARRYDHSSDSI 519
            :...|.:  |::.|:|  ...:||.|.:   .|::.|..|   .::    |.|..:........:
 Worm   124 VRSDTQEWSLMLSFSKISYFMSFTFINELSLADKLILFTA---NILRTGTMARAMKSVLEKRSIL 185

  Fly   520 FFANNRSYTRDSYKMAGMADNIEDLLH-----FCRQMFSMKVDNVEYALLTAI----VIFSDRPG 575
            .|.|..:..  ..:|..|.:|.:.|:|     ...:...:::|..||.||..|    ...||:..
 Worm   186 IFPNEENIF--PVEMNTMFENSDVLVHQIALRIVAKFAELRMDRREYLLLKMIDFCNSAISDKLS 248

  Fly   576 LEKAQLVEAIQSYYIDTLRIYILNRHCGDSMSLVF---YAKLLSILTEL-RTLGNQNAE----MC 632
            .....::...|..|...|.     :||..:.|...   :.:|||:...: :|:.|....    .|
 Worm   249 YHAKNILSFHQKVYSSALL-----QHCQFTNSRTAPTRFTELLSVFNTIHKTVNNMRFSCMMVQC 308

  Fly   633 FSLKLKNRKLPKFLEEIW 650
            |   :.|.|..|.:.|::
 Worm   309 F---VPNFKFKKLMREVY 323

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_724460.1 NR_DBD_EcR 261..351 CDD:143535 22/79 (28%)
NR_LBD_EcR 420..652 CDD:132736 52/259 (20%)
nhr-196NP_506900.2 ZnF_C4 2..63 CDD:197701 22/112 (20%)
HOLI 134..295 CDD:214658 34/170 (20%)

Return to query results.
Submit another query.