DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment EcR and nhr-164

DIOPT Version :10

Sequence 1:NP_724460.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_001309454.1 Gene:nhr-164 / 183381 WormBaseID:WBGene00008056 Length:373 Species:Caenorhabditis elegans


Alignment Length:408 Identity:79/408 - (19%)
Similarity:137/408 - (33%) Gaps:151/408 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   263 LCLVCGDRAS-GYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECRLKKCL- 325
            :|.|||.... .||:..:.|..|..||||:|:.:..|.|.....|:.   |.:||:.||.:.|: 
 Worm    41 VCAVCGFSCQVQYHFGGVVCGACSAFFRRTVSLNIRYLCDGDNQCKS---MLKKCRACRFESCVK 102

  Fly   326 AVGMRPECVVPENQCAMKRREKKAQKEKDKMTTSPSSQHGGNGSLASGGGQDFVKKEILDLMTCE 390
            ..||:...|         ||:|...|      |:|.                ::|..        
 Worm   103 TAGMKRSLV---------RRKKPTIK------TTPL----------------YIKNR-------- 128

  Fly   391 PPQHATIPLLPDEILAKCQARN-------IPSLTYNQLAVIYKLIWYQDGYEQPSEEDLRRIMSQ 448
                            :...||       |||.|                :..|:.|.:.     
 Worm   129 ----------------ETHVRNEDVLRAFIPSYT----------------HPSPANETVE----- 156

  Fly   449 PDENESQTDVSFRHITEITILTVQLIVEFAKGLPAFTKIPQEDQITLL--------KACSS---- 501
             |:.:....:...|...:.....|:.....|....||....||.:.|:        :.|||    
 Worm   157 -DKGKFSEKLKLSHGNILKFYINQVRYAKRKNTNIFTIKTTEDFMRLVNFQRKIADETCSSFPGV 220

  Fly   502 ------EVMMLRMARRYDHSSDSIFFANNRSY--TRDSYKMAGMADNIEDLLHFCRQMFSMKVDN 558
                  .:::||...::    .|::..:..:|  |..|..:    ||:|        |.....:.
 Worm   221 ELIDENNILILRKYLQF----SSVWIESTWTYWITNSSVSV----DNME--------MDKRLKEL 269

  Fly   559 VEYALLTAIVIFSDRPGLEKAQLVE--AIQSYYIDTLRIYILNRHCGDSMSLVFYAKLLSILTEL 621
            :|:...|.::..|..    |..:.|  |.:|:::               ..|||:...::    :
 Worm   270 IEHVKSTLLISLSQL----KLNIFEFAAFKSFFV---------------WKLVFHKTSVA----M 311

  Fly   622 RTLGNQNAEMCFSLKLKN 639
            :|:|.::.| |.|..||:
 Worm   312 KTIGQEHYE-CVSSALKS 328

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_724460.1 NR_DBD_EcR 261..351 CDD:143535 28/89 (31%)
NR_LBD_EcR 420..652 CDD:132736 41/242 (17%)
nhr-164NP_001309454.1 ZnF_C4 42..109 CDD:197701 24/69 (35%)
HOLI 212..358 CDD:214658 30/157 (19%)

Return to query results.
Submit another query.