DRSC/TRiP Functional Genomics Resources

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Protein Alignment scaf and Jon99Ci

DIOPT Version :10

Sequence 1:NP_610180.1 Gene:scaf / 35505 FlyBaseID:FBgn0033033 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_524555.1 Gene:Jon99Ci / 43545 FlyBaseID:FBgn0003358 Length:272 Species:Drosophila melanogaster


Alignment Length:269 Identity:61/269 - (22%)
Similarity:104/269 - (38%) Gaps:56/269 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   410 GVCATRNKRTKPTGVKDLD---------------ANFAEIPW-QAMILRESSKTLICGGAIIGDQ 458
            |||:...........:||:               |:..::|: ..:.|..:.....|||:|||..
  Fly    13 GVCSALTVPHSLVHPRDLEIRHGGIEGRITNGNLASEGQVPYIVGVSLNSNGNWWWCGGSIIGHT 77

  Fly   459 FVLSSASCVNGLPVTDIRVKAGEWELGSTNEPLPFQLTGVKTVDVHPDY---DPSTNSHDLAIIR 520
            :||::|.|..|.....:...|..:     |||........:....:|.|   |     ||||:|:
  Fly    78 WVLTAAHCTAGADEASLYYGAVNY-----NEPAFRHTVSSENFIRYPHYVGLD-----HDLALIK 132

  Fly   521 LERRLEFASHIQPICISDEDPK----DSEQCFTSGWGKQALSIHEEGAL---MHVTDTLPQARSE 578
            .. .::|.|.:..|.:...|.:    ::.....:|||    :|::...:   :.|.|....:.:|
  Fly   133 TP-HVDFYSLVNKIELPSLDDRYNSYENNWVQAAGWG----AIYDGSNVVEDLRVVDLKVISVAE 192

  Fly   579 C-------SADSSSVCSATKFD--SCQFDVGSALACGSGSSVRLKGI--FAGENSCGEGQTVRFA 632
            |       :|..:::|..|...  :||.|.|..|....|.  :|.||  |.....|..|....|.
  Fly   193 CQAYYGTDTASENTICVETPDGKATCQGDSGGPLVTKEGD--KLIGITSFVSAYGCQVGGPAGFT 255

  Fly   633 KPD--IKWI 639
            :..  ::||
  Fly   256 RVTKYLEWI 264

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scafNP_610180.1 Atrophin-1 <63..>338 CDD:460830
CLIP_SPH_Scar 343..408 CDD:465747
Tryp_SPc 428..616 CDD:238113 48/222 (22%)
Jon99CiNP_524555.1 Tryp_SPc 41..266 CDD:238113 56/241 (23%)
Blue background indicates that the domain is not in the aligned region.

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