DRSC/TRiP Functional Genomics Resources

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Protein Alignment scaf and Jon99Cii

DIOPT Version :10

Sequence 1:NP_610180.1 Gene:scaf / 35505 FlyBaseID:FBgn0033033 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_524554.1 Gene:Jon99Cii / 43544 FlyBaseID:FBgn0003356 Length:265 Species:Drosophila melanogaster


Alignment Length:259 Identity:58/259 - (22%)
Similarity:101/259 - (38%) Gaps:47/259 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   417 KRTKPTGVKDLDANF--------AEIPWQAMILRESSKTLICGGAIIGDQFVLSSASCVNGLPVT 473
            ::..||.:||:....        .::|:...:|...:....|||:|||:.:||::|.|.||....
  Fly    22 QKLTPTPIKDIQGRITNGYPAYEGKVPYIVGLLFSGNGNWWCGGSIIGNTWVLTAAHCTNGASGV 86

  Fly   474 DIRVKAGEWELGSTNEPLPFQLTGVKTVDVHPDYDPSTNSHDLAIIRLERRLEFASHIQPICISD 538
            .|...|     ....:|......|...:..|..|:.....:|:::||.. .::|.|.:..:    
  Fly    87 TINYGA-----SIRTQPQYTHWVGSGDIIQHHHYNSGNLHNDISLIRTP-HVDFWSLVNKV---- 141

  Fly   539 EDPKDSEQ--------CFTSGWGKQALSIHEEGAL---MHVTDTLPQARSEC----SADSSSVCS 588
            |.|..:::        ...||||    ..::...|   :...|....::|:|    |...:.:|.
  Fly   142 ELPSYNDRYQDYAGWWAVASGWG----GTYDGSPLPDWLQSVDVQIISQSDCSRTWSLHDNMICI 202

  Fly   589 ATK--FDSCQFDVGSALACGSGSSVRLKGI--FAGENSCGEGQTVRFAKPD--IKWI--NTAFA 644
            .|.  ..:|..|.|..|....|:  ||.|:  |.....|..|....|::..  :.||  ||..:
  Fly   203 NTDGGKSTCGGDSGGPLVTHDGN--RLVGVTSFGSAAGCQSGAPAVFSRVTGYLDWIRDNTGIS 264

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scafNP_610180.1 Atrophin-1 <63..>338 CDD:460830
CLIP_SPH_Scar 343..408 CDD:465747
Tryp_SPc 428..616 CDD:238113 45/212 (21%)
Jon99CiiNP_524554.1 Tryp_SPc 36..260 CDD:238113 52/239 (22%)
Blue background indicates that the domain is not in the aligned region.

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