DRSC/TRiP Functional Genomics Resources

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Protein Alignment scaf and CG18179

DIOPT Version :10

Sequence 1:NP_610180.1 Gene:scaf / 35505 FlyBaseID:FBgn0033033 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_648340.1 Gene:CG18179 / 39124 FlyBaseID:FBgn0036023 Length:268 Species:Drosophila melanogaster


Alignment Length:230 Identity:52/230 - (22%)
Similarity:84/230 - (36%) Gaps:55/230 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   444 SSKTLICGGAIIGDQFVLSSASCVNGLPVTD-IRVKAGE---WELGSTNEPLPFQLTGVKTVDV- 503
            |:...:..|.||...::|::|.|:    .|| :.:..|.   |. |:..:       .|:..:. 
  Fly    64 SNSAAVGAGTIIASDWILTAAHCL----TTDYVEIHYGSNWGWN-GAFRQ-------SVRRDNFI 116

  Fly   504 -HPDYDPSTNSHDLAIIRLERRLEFASHIQPICISDEDPKDSEQ--------CFTSGWGKQALSI 559
             ||:: |:....|:.:||.. .:.|...|..:.:    |..||:        |...|||..    
  Fly   117 SHPNW-PAEGGRDIGLIRTP-SVGFTDLINKVAL----PSFSEESDRFVDTWCVACGWGGM---- 171

  Fly   560 HEEGAL---MHVTDTLPQARSECSADSSSVCSATKFDSCQFDVGSALACGSGS--------SVRL 613
             :.|.|   :...|....:.|||.....:|.|.   |.|........:||..|        :.||
  Fly   172 -DNGNLADWLQCMDVQIISNSECEQSYGTVAST---DMCTRRTDGKSSCGGDSGGPLVTHDNARL 232

  Fly   614 KGIFA-GENSCGEGQTVRFAKPD-IKWI--NTAFA 644
            .|:.. |...|..|.:......| :.||  ||..:
  Fly   233 VGVITFGSVDCHSGPSGYTRVTDYLGWIRDNTGIS 267

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scafNP_610180.1 Atrophin-1 <63..>338 CDD:460830
CLIP_SPH_Scar 343..408 CDD:465747
Tryp_SPc 428..616 CDD:238113 43/196 (22%)
CG18179NP_648340.1 Tryp_SPc 40..263 CDD:238113 50/224 (22%)
Blue background indicates that the domain is not in the aligned region.

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