DRSC/TRiP Functional Genomics Resources

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Protein Alignment scaf and Jon66Cii

DIOPT Version :10

Sequence 1:NP_610180.1 Gene:scaf / 35505 FlyBaseID:FBgn0033033 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_648217.1 Gene:Jon66Cii / 38953 FlyBaseID:FBgn0035887 Length:262 Species:Drosophila melanogaster


Alignment Length:211 Identity:48/211 - (22%)
Similarity:76/211 - (36%) Gaps:43/211 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   450 CGGAIIGDQFVLSSASCVNGLPVTDIRVKAGEWELGSTNEPLPFQLT---GVKTVDVHPDYDPST 511
            |||:||...:||::..|:.......:...| .|.   ||.    |.|   |......|       
  Fly    65 CGGSIIAHDWVLTAEHCIGDADSVTVYFGA-TWR---TNA----QFTHWVGNGNFIKH------- 114

  Fly   512 NSHDLAIIRLERRLEFASHIQPICISDEDPKDSEQ----CFTSGWGKQALSIHEEGAL---MHVT 569
            :|.|:|:||:. .::|...:..:.:...:.:.::.    ....|||    ..::...|   :...
  Fly   115 SSADIALIRIP-HVDFWHMVNKVELPSYNDRYNDYNEWWAVACGWG----GTYDGSPLPDYLQCV 174

  Fly   570 DTLPQARSECSADSSSV-----CSATK--FDSCQFDVGSALACGSGSSVRLKGI--FAGENSCGE 625
            |......||||....||     |..|.  ..:|..|.|..|....|:  :|.|:  |.....|..
  Fly   175 DLQIIHNSECSGYYGSVGDNILCVRTPDGKSTCGGDSGGPLVTHDGT--KLVGVTNFGSVAGCQS 237

  Fly   626 GQTVRFAKP--DIKWI 639
            |....|.:.  .:.||
  Fly   238 GAPAGFQRVTYHLDWI 253

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scafNP_610180.1 Atrophin-1 <63..>338 CDD:460830
CLIP_SPH_Scar 343..408 CDD:465747
Tryp_SPc 428..616 CDD:238113 41/182 (23%)
Jon66CiiNP_648217.1 Tryp_SPc 40..256 CDD:238113 48/211 (23%)
Blue background indicates that the domain is not in the aligned region.

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