Protein Alignment scaf and Jon65Aiii

DIOPT Version :10

• Sequence 1: NP_610180.1
• Gene: scaf / 35505
• FlyBaseID: FBgn0033033
• Length: 655
• Species: Drosophila melanogaster
• Sequence 2: NP_648013.1
• Gene: Jon65Aiii / 38683
• FlyBaseID: FBgn0035665
• Length: 274
• Species: Drosophila melanogaster
• Alignment Length: 276
• Identity: 65/276 - (23%)
• Similarity: 103/276 - (37%)
• Gaps: 70/276 - (25%)

  Fly   405 PVNLAGVCATRNKRTKPTGVKDLDANFAEIPWQ-AMILRESSKTLICGGAIIGDQFVLSSASCVN 468
            |::...:.|..|...:.|..|  .|...:.|:| .:....:|.:..|||:||.:.:||::|.|.:
  Fly    24 PIHPRDLPAVTNIEGRITNGK--TATSGQFPYQVGLSFASTSGSWWCGGSIIDNTWVLTAAHCTS 86

  Fly   469 GLPVTDI------RVKAGEWELGSTNEPLPFQLTGVKTVDV-----HPDYDPSTNSHDLAIIR-- 520
            |.....|      |..|              ||  |:||..     |..|:.....:|:::|:
  Fly    87 GASAVTIYYGATVRTSA--------------QL--VQTVSADNFVQHASYNSIVLRNDISLIKTP 135

  Fly   521 ------LERRLEFASHIQPICISDEDPKDSEQCFTSGWGKQALSIHEEGALMHVTDTLPQ----- 574
                  |..::|.     |...........:|...|||||.:      .:...|.:||..
  Fly   136 TVAFTALINKVEL-----PAIAGTYSTYTGQQAIASGWGKTS------DSATSVANTLQYEVFEV 189

  Fly   575 -ARSECS-------ADSSSVCSAT--KFDSCQFDVGSALACGSGSSVRLKGI--FAGENSCGEGQ 627
             :.|:|.       |.::.:|.||  |..:|..|.|..|...|.|  :|.|:  |.....|..|.
  Fly   190 VSVSQCQNTYGSLVATNNVICVATPNKVSTCNGDSGGPLVLVSDS--KLIGVTSFVSSAGCESGA 252

  Fly   628 TVRFAKPD--IKWINT 641
            ...|.:..  :.||.|
  Fly   253 PAGFTRVTSYLDWIKT 268

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
scaf	NP_610180.1	Atrophin-1	<63..>338	CDD:460830
		CLIP_SPH_Scar	343..408	CDD:465747	1/2 (50%)
		Tryp_SPc	428..616	CDD:238113	52/222 (23%)
Jon65Aiii	NP_648013.1	Tryp_SPc	39..266	CDD:214473	59/257 (23%)