DRSC/TRiP Functional Genomics Resources

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Protein Alignment scaf and CG8952

DIOPT Version :10

Sequence 1:NP_610180.1 Gene:scaf / 35505 FlyBaseID:FBgn0033033 Length:655 Species:Drosophila melanogaster
Sequence 2:NP_573072.1 Gene:CG8952 / 32525 FlyBaseID:FBgn0030688 Length:276 Species:Drosophila melanogaster


Alignment Length:238 Identity:65/238 - (27%)
Similarity:111/238 - (46%) Gaps:43/238 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   424 VKDLDANFAEIPWQAMILRESSKTLICGGAIIGDQFVLSSASCVNGLPVTDIRVKAGEWELGSTN 488
            |...||...:.|||.::.|::...|:|||:||.|.:||::|.|.|||  :.|.:..|..:|.:.|
  Fly    39 VSGSDAKLGQFPWQVILKRDAWDDLLCGGSIISDTWVLTAAHCTNGL--SSIFLMFGTVDLFNAN 101

  Fly   489 EPLPFQLTGVKTVDVHPDYDPSTNSHDLAIIRLERRLEFASHIQPICISDE--DPKD--SEQCFT 549
               ...:|. ..:.:||||:...| :|:::|:|...|.|:::||.|.:..:  |..|  ......
  Fly   102 ---ALNMTS-NNIIIHPDYNDKLN-NDVSLIQLPEPLTFSANIQAIQLVGQYGDSIDYVGSVATI 161

  Fly   550 SGWGKQALSIHEEGALMHVTDTLPQARSECSADSSSVCSATKF---DSCQ----FDVGSALACGS 607
            :|:|      :.|...:..::||..|:.|...::..|....|:   ||..    || ||.::..:
  Fly   162 AGFG------YTEDEYLDYSETLLYAQVEIIDNADCVAIYGKYVVVDSTMCAKGFD-GSDMSTCT 219

  Fly   608 GSSVRLKGIFAGENSCGEGQTVRFAKPDIKW----INTAFAEN 646
            |.|              .|..:.:.|...:|    ||:..||:
  Fly   220 GDS--------------GGPLILYNKTIQQWQQIGINSFVAED 248

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scafNP_610180.1 Atrophin-1 <63..>338 CDD:460830
CLIP_SPH_Scar 343..408 CDD:465747
Tryp_SPc 428..616 CDD:238113 57/198 (29%)
CG8952NP_573072.1 Tryp_SPc 37..268 CDD:214473 65/238 (27%)
Blue background indicates that the domain is not in the aligned region.

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