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Protein Alignment Nubpl and Nubp1

DIOPT Version :9

Sequence 1:	NP_610143.3	Gene:	Nubpl / 35452	FlyBaseID:	FBgn0032986	Length:	293	Species:	Drosophila melanogaster
Sequence 2:	NP_001009619.1	Gene:	Nubp1 / 287042	RGDID:	1310514	Length:	320	Species:	Rattus norvegicus

Alignment Length:	275	Identity:	101/275 - (36%)
Similarity:	147/275 - (53%)	Gaps:	36/275 - (13%)

- Green bases have known domain annotations that are detailed below.

  Fly    38 VQDIIVVASGKGGVGKSTVAVNFACSLAKLG-KRVGLLDGDIFGPTIPLLMNVHGE--------- 92
            |:..|:|.||||||||||.:.:.|..||:.| .:|.|||.||.||:||.:|.:.||
  Rat    53 VRHRILVLSGKGGVGKSTFSAHLAHGLAEDGDTQVALLDIDICGPSIPKIMGLEGEQVHQSGSGW 117

  Fly    93 -PVVNDKNLMIPPQNYNVKCLSMG-MLTPVETSVIWRGPLVMSAIQRLLKGTDWGLLDVLVIDTP 155
             ||..:.||.:         :|:| :|:..:.:||||||.....|::.|:..|||.:|.||||||
  Rat   118 SPVYVEDNLGV---------MSVGFLLSSPDDAVIWRGPKKNGMIKQFLRDVDWGDVDYLVIDTP 173

  Fly   156 PGTGDVHLSLSQH---APITGVILVTTPHTAAVQVTLKGASMYEKLNVPIFGVVENMKYTICQNC 217
            |||.|.|||:.|:   |.|.|.:::|||...|:|...|..|...|:.:||.||||||...||..|
  Rat   174 PGTSDEHLSVVQYLAAAHIDGAVILTTPQEVALQDVRKEISFCHKVKLPIIGVVENMSGFICPKC 238

  Fly   218 NQRLEFF------KDSRISSLPRKLI-SLPLDSRIADSNESGVPVVIKYPDSKYSYLFTQLAEEI 275
            .:..:.|      .::...:|...|: .:|||..|..|.:.|....::.|||..:..:..:.:.|
  Rat   239 KRESQIFPPTTGGAEAMCQALKIPLLGKVPLDPHIGKSCDKGQSFFVEAPDSPATAAYKSIIQRI 303

  Fly   276 TQILNEQRCNQNQNN 290
            .:.     ||..|::
  Rat   304 REF-----CNSRQSH 313

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Nubpl	NP_610143.3	ParA	37..275	CDD:431392	97/258 (38%)
Nubp1	NP_001009619.1	ParA	53..303	CDD:431392	97/258 (38%)

Information from Original Tools:

Software error:

Can't use an undefined value as an ARRAY reference at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 1034.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.