DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir40a and GRIN2C

DIOPT Version :10

Sequence 1:NP_610140.4 Gene:Ir40a / 35449 FlyBaseID:FBgn0259683 Length:732 Species:Drosophila melanogaster
Sequence 2:XP_054171851.1 Gene:GRIN2C / 2905 HGNCID:4587 Length:1265 Species:Homo sapiens


Alignment Length:512 Identity:93/512 - (18%)
Similarity:172/512 - (33%) Gaps:165/512 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   265 LLMLLSKHMNFRFK-YIEAPGRTQGSMRSEDGKDSNDSFTGGIGLLQSGQADFFLGDVGLSWERR 328
            :|..|::.:.|.:. |:...|:        .||.....:.|.||.:...:||..:|.:.::.||.
Human   461 ILKKLARVVKFSYDLYLVTNGK--------HGKRVRGVWNGMIGEVYYKRADMAIGSLTINEERS 517

  Fly   329 KAIEFSFFTLADSGAFATHAPRRLNEAL---AIMRPFKQDIWPHLILTIIFSGPIFYGIIALPYI 390
            :.::|| ....::|.....|  |.|..:   |.:.|:...:|..:.:..:       .::|:...
Human   518 EIVDFS-VPFVETGISVMVA--RSNGTVSPSAFLEPYSPAVWVMMFVMCL-------TVVAITVF 572

  Fly   391 WRRRWANSDVEHLGELYIHMTYLKEITPRLLKLKPRTVLSAHQMPHQLFQKCIWFTLRLFLKQSC 455
                        :.|.:..::|.:.:|.......|...:.          |.:|....|....|.
Human   573 ------------MFEYFSPVSYNQNLTRGKKSGGPAFTIG----------KSVWLLWALVFNNSV 615

  Fly   456 N-ELHNGYRAKFLTIVYWIAATYVLADVYSAQL-------------------------------- 487
            . |...|..:|.:.:|:...|...||. |:|.|                                
Human   616 PIENPRGTTSKIMVLVWAFFAVIFLAS-YTANLAAFMIQEQYIDTVSGLSDKKSLHLENTGVAWT 679

  Fly   488 ------TSQFARPARE-PPI---------------NTLQRLQAAMIHDGYRLYVEKESSSLEMLE 530
                  :..|.||..: ||.               :..:.:...|:....| .||...:||:|..
Human   680 AFKTFCSDYFQRPQDQYPPFRFGTVPNGSTERNIRSNYRDMHTHMVKFNQR-SVEDALTSLKMGS 743

  Fly   531 NGTELFRQLYALMRQ-QVINDPQGFFIDSVEAGIKLIAEG-GEDKAVLGGRETLFFNVQQYGSNN 593
            ....:.|:|.|.:.. .|:|     ::...:.|.||:..| |:..|..|           ||   
Human   744 EAQPVPRKLDAFIYDAAVLN-----YMAGKDEGCKLVTIGSGKVFATTG-----------YG--- 789

  Fly   594 FQLSQKLYTRYSAVAVQIGCPFLGSLNNVLMQLFESGILDKMTAAEYAKQYQEVEATRIYKGSVQ 658
                         :|:|....:..:::..|:|....|            :.|::|...: .|..|
Human   790 -------------IAMQKDSHWKRAIDLALLQFLGDG------------ETQKLETVWL-SGICQ 828

  Fly   659 AKNSEAYSRTESYDSTVISPLNLRMLQGAFIALGVGSLAAGVILLL----EIVFIKL 711
            .:.:|..|          |.|::..:.|.|..|.|   |.|:.||:    .:|:.||
Human   829 NEKNEVMS----------SKLDIDNMAGVFYMLLV---AMGLALLVFAWEHLVYWKL 872

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir40aNP_610140.4 Lig_chan-Glu_bd <265..336 CDD:463166 17/71 (24%)
Periplasmic_Binding_Protein_Type_2 297..>391 CDD:473866 18/96 (19%)
Periplasmic_Binding_Protein_Type_2 <496..637 CDD:473866 28/158 (18%)
GRIN2CXP_054171851.1 PBP1_iGluR_NMDA_NR2 28..384 CDD:380601
PBP2_iGluR_NMDA_Nr2 400..829 CDD:270436 77/454 (17%)
NMDAR2_C 866..>941 CDD:463148 3/7 (43%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.