DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir40a and Grik4

DIOPT Version :10

Sequence 1:NP_610140.4 Gene:Ir40a / 35449 FlyBaseID:FBgn0259683 Length:732 Species:Drosophila melanogaster
Sequence 2:NP_036704.1 Gene:Grik4 / 24406 RGDID:2734 Length:956 Species:Rattus norvegicus


Alignment Length:696 Identity:135/696 - (19%)
Similarity:237/696 - (34%) Gaps:197/696 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    87 VFSQTELFFQHIEENLQGANECISLILDEPNQLLNSLHDRHLGHRLSLFIFYWGARWPPSSRVIR 151
            :|:|:..|||                  |.:|.||.....:..|     :.:.|   |..|..:.
  Rat   270 IFNQSHAFFQ------------------EFSQSLNQSWQENCDH-----VPFTG---PALSSALL 308

  Fly   152 FREPLRVVVVTRPRKKAFRIYYNQARPCSDSQLQLVNWYDGDNL--GLQRIPLLPTALSVYANFK 214
            |.....||...:...::..|   ..:|.|....|:  |..|.:|  .|:.:.|......:..|.|
  Rat   309 FDAVYAVVTAVQELNRSQEI---GVKPLSCGSAQI--WQHGTSLMNYLRMVELEGLTGHIEFNSK 368

  Fly   215 GR--TFRVPVFHSPPWFWVTYCNNSFEEDEEF---------------NSLDSIEKRKVRVTGGRD 262
            |:  .:.:.:        :.:..|.|.:..::               |..||:....:.||...:
  Rat   369 GQRSNYALKI--------LQFTRNGFRQIGQWHVAEGLSMDSRLYASNISDSLFNTTLVVTTILE 425

  Fly   263 HRLLMLLSKHMNFRFKYIEAPGRTQG---SMRSE---------------DG----KDSNDSFTGG 305
            :..|||...|.:     :|...|.:|   .|..|               ||    .::|.::||.
  Rat   426 NPYLMLKGNHQD-----MEGNDRYEGFCVDMLKELAEILRFNYKIRLVGDGVYGVPEANGTWTGM 485

  Fly   306 IGLLQSGQADFFLGDVGLSWERRKAIEFS--FFTLADSGAFATHAPRRLNEALAIMRPFKQDIWP 368
            :|.|.:.:||..:..:.::.||.|.|:||  |.||..|..:..|..||.. ..:.:.||...:|.
  Rat   486 VGELIARKADLAVAGLTITAEREKVIDFSKPFMTLGISILYRVHMGRRPG-YFSFLDPFSPGVWL 549

  Fly   369 HLILTIIFSGPIFYGIIAL-PYIWRRRWANSDVEHLGELYIHMTYLKEITPRLLKLKPRTVLSAH 432
            .::|..:....:.:.:..| ||.|                                         
  Rat   550 FMLLAYLAVSCVLFLVARLTPYEW----------------------------------------- 573

  Fly   433 QMPHQLFQ-KC------------IWFTLRLFLKQSCNELHNGYRAKFLTIVYWIAATYVLADVYS 484
            ..||...| :|            :||.:..|::|...........:.::.|:| |.|.::...|:
  Rat   574 YSPHPCAQGRCNLLVNQYSLGNSLWFPVGGFMQQGSTIAPRALSTRCVSGVWW-AFTLIIISSYT 637

  Fly   485 AQLTSQFARPAREPPINTLQRL--QAAM----IHDGYRLYVEKESSSLEMLENGTELFRQLYALM 543
            |.|.:.......|.||.::..|  |.|:    ||.|         ||:...:|..   .|.|..|
  Rat   638 ANLAAFLTVQRMEVPIESVDDLADQTAIEYGTIHGG---------SSMTFFQNSR---YQTYQRM 690

  Fly   544 RQQVINDPQGFFIDSVEAGIKLIAEGGEDKAVLGGRETLFFNVQQYGSNNFQLSQKLYTRYSAVA 608
            ...:.:.....|:.|.|.||..:........:   ..|:....:|...|..|:...|.|:...:.
  Rat   691 WNYMYSKQPSVFVKSTEEGIARVLNSNYAFLL---ESTMNEYYRQRNCNLTQIGGLLDTKGYGIG 752

  Fly   609 VQIGCPFLGSLNNVLMQLFESGILDKMTAAEYAKQYQEVEATRIYKGSVQAKNSEAYSRTESYDS 673
            :.:|..|....:..::||.|:..|             |:...:.::|....|..:..::      
  Rat   753 MPVGSVFRDEFDLAILQLQENNRL-------------EILKRKWWEGGKCPKEEDHRAK------ 798

  Fly   674 TVISPLNLRMLQGAFIALGVGSLAAGVILLLEIVFIKLDQARLWML 719
                .|.:..:.|.|:.|..|.:.|..:.:||.         ||.|
  Rat   799 ----GLGMENIGGIFVVLICGLIVAIFMAMLEF---------LWTL 831

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir40aNP_610140.4 Lig_chan-Glu_bd <265..336 CDD:463166 24/94 (26%)
Periplasmic_Binding_Protein_Type_2 297..>391 CDD:473866 27/96 (28%)
Periplasmic_Binding_Protein_Type_2 <496..637 CDD:473866 32/146 (22%)
Grik4NP_036704.1 Periplasmic_Binding_Protein_type1 24..402 CDD:471960 30/170 (18%)
PBP2_iGluR_kainate_KA1 415..785 CDD:270442 89/445 (20%)
QRL_CxxC_CxxC 863..927 CDD:469521
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 931..956
Blue background indicates that the domain is not in the aligned region.

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