DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir40a and Grin2c

DIOPT Version :10

Sequence 1:NP_610140.4 Gene:Ir40a / 35449 FlyBaseID:FBgn0259683 Length:732 Species:Drosophila melanogaster
Sequence 2:XP_017169765.1 Gene:Grin2c / 14813 MGIID:95822 Length:1307 Species:Mus musculus


Alignment Length:491 Identity:94/491 - (19%)
Similarity:172/491 - (35%) Gaps:146/491 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   265 LLMLLSKHMNFRFK-YIEAPGRTQGSMRSEDGKDSNDSFTGGIGLLQSGQADFFLGDVGLSWERR 328
            :|..|:|.:.|.:. |:...|:        .||.....:.|.||.:...:||..:|.:.::.||.
Mouse   523 ILKKLAKVVKFSYDLYLVTNGK--------HGKRVRGVWNGMIGEVYYKRADMAIGSLTINEERS 579

  Fly   329 KAIEFSFFTLADSGAFATHAPRRLNEAL---AIMRPFKQDIWPHLILTIIFSGPIFYGIIALPYI 390
            :.|:|| ....::|.....|  |.|..:   |.:.|:...:|..:.:..:       .::|:...
Mouse   580 EIIDFS-VPFVETGISVMVA--RSNGTVSPSAFLEPYSPAVWVMMFVMCL-------TVVAITVF 634

  Fly   391 WRRRWANSDVEHLGELYIHMTYLKEITPRLLKLKPRTVLSAHQMPHQLFQKCIWFTLRLFLKQSC 455
                        :.|.:..::|.:.:|.......|...:.          |.:|....|....|.
Mouse   635 ------------MFEYFSPVSYNQNLTKGKKSGGPSFTIG----------KSVWLLWALVFNNSV 677

  Fly   456 N-ELHNGYRAKFLTIVYWIAATYVLADVYSAQLTS-----------------QFARPARE-PPI- 500
            . |...|..:|.:.:|:...|...||. |:|.|.:                 :|.||..: ||. 
Mouse   678 PIENPRGTTSKIMVLVWAFFAVIFLAS-YTANLAAFMIQEQYIDTVSGLSDKKFQRPQDQYPPFR 741

  Fly   501 --------------NTLQRLQAAMIHDGYRLYVEKESSSLEMLENGTELFRQLYALMRQ-QVIND 550
                          :..:.:...|:....| .||...:||:|  ....:.|:|.|.:.. .|:| 
Mouse   742 FGTVPNGSTERNIRSNYRDMHTHMVKFNQR-SVEDALTSLKM--GARHVSRKLDAFIYDAAVLN- 802

  Fly   551 PQGFFIDSVEAGIKLIAEG-GEDKAVLGGRETLFFNVQQYGSNNFQLSQKLYTRYSAVAVQIGCP 614
                ::...:.|.||:..| |:..|..|           ||                :|:|....
Mouse   803 ----YMAGKDEGCKLVTIGSGKVFATTG-----------YG----------------IAMQKDSH 836

  Fly   615 FLGSLNNVLMQLFESGILDKMTAAEYAKQYQEVEATRIYKGSVQAKNSEAYSRTESYDSTVISPL 679
            :..:::..|:|....|            :.|::|...: .|....:.:|..|          |.|
Mouse   837 WKRAIDLALLQFLGDG------------ETQKLETVWL-SGICHNEKNEVMS----------SKL 878

  Fly   680 NLRMLQGAFIALGVGSLAAGVILLL----EIVFIKL 711
            ::..:.|.|..|.|   |.|:.||:    .:|:.||
Mouse   879 DIDNMAGVFYMLLV---AMGLALLVFAWEHLVYWKL 911

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir40aNP_610140.4 Lig_chan-Glu_bd <265..336 CDD:463166 19/71 (27%)
Periplasmic_Binding_Protein_Type_2 297..>391 CDD:473866 19/96 (20%)
Periplasmic_Binding_Protein_Type_2 <496..637 CDD:473866 28/158 (18%)
Grin2cXP_017169765.1 PBP1_iGluR_NMDA_NR2 90..446 CDD:380601
PBP2_iGluR_NMDA_Nr2 462..868 CDD:270436 79/433 (18%)
NMDAR2_C 905..>980 CDD:463148 3/7 (43%)
Blue background indicates that the domain is not in the aligned region.

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