DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir40a and Gria1

DIOPT Version :10

Sequence 1:NP_610140.4 Gene:Ir40a / 35449 FlyBaseID:FBgn0259683 Length:732 Species:Drosophila melanogaster
Sequence 2:NP_032191.2 Gene:Gria1 / 14799 MGIID:95808 Length:907 Species:Mus musculus


Alignment Length:540 Identity:101/540 - (18%)
Similarity:199/540 - (36%) Gaps:111/540 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   189 WYDGDNLGLQRIPLLPTALSVYA-----NFKGRTFRVPVFHSPPWFWVTYCNNSFEEDEEFNSLD 248
            |.:.|.       .:|.|....|     :.:.||:.|......|:..:....|.||.::.:.   
Mouse   382 WNEDDK-------FVPAATDAQAGGDNSSVQNRTYIVTTILEDPYVMLKKNANQFEGNDRYE--- 436

  Fly   249 SIEKRKVRVTGGRDHRLLMLLSKHMNFRFKYIEAPGRTQGSMRSEDGKDSNDSFTGGIGLLQSGQ 313
                       |....|...::||:.:.:: :|.....:...|..|.|    ::.|.:|.|..|:
Mouse   437 -----------GYCVELAAEIAKHVGYSYR-LEIVSDGKYGARDPDTK----AWNGMVGELVYGR 485

  Fly   314 ADFFLGDVGLSWERRKAIEFS--FFTLADSGAFATHAPRRLNEAL-AIMRPFKQDIWPHLILTII 375
            ||..:..:.::..|.:.|:||  |.:|..|  .....|::....: :.:.|...:||    :.|:
Mouse   486 ADVAVAPLTITLVREEVIDFSKPFMSLGIS--IMIKKPQKSKPGVFSFLDPLAYEIW----MCIV 544

  Fly   376 FSGPIFYGIIALPYIWRR----RWANSDVEHLGELYIHMTYLKEITPRLLKLKPRTVLSAHQMPH 436
            |:   :.|:..:.::..|    .|.:.:.|                      :.|...::.|...
Mouse   545 FA---YIGVSVVLFLVSRFSPYEWHSEEFE----------------------EGRDQTTSDQSNE 584

  Fly   437 QLFQKCIWFTLRLFLKQSCNELHNGYRAKFLTIVYWIAATYVLADVYSAQLTSQFARPAREPPIN 501
            ......:||:|..|::|.|:........:.:..|:|. .|.::...|:|.|.:.........||.
Mouse   585 FGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWF-FTLIIISSYTANLAAFLTVERMVSPIE 648

  Fly   502 TLQRLQAAMIHDGYRLYVEKESSSLEMLENGTELFRQLYALMRQQVINDPQGFFIDSVEAGIKLI 566
            :.:.| |......|.. :|..|:......:...:|.:::..|:..   :|..|...:.|..|::.
Mouse   649 SAEDL-AKQTEIAYGT-LEAGSTKEFFRRSKIAVFEKMWTYMKSA---EPSVFVRTTEEGMIRVR 708

  Fly   567 AEGGEDKAVLGGRETLFFNVQQYGSNNFQLSQKLYTRYSAVAVQIGCPFLGSLNNVLMQLFESGI 631
            ...|:...:|......:.. |:...:..::...|.::...:|...|......:|..:::|.|.|:
Mouse   709 KSKGKYAYLLESTMNEYIE-QRKPCDTMKVGGNLDSKGYGIATPKGSALRNPVNLAVLKLNEQGL 772

  Fly   632 LDKMTAAEYAKQYQEVEATRIYKGSVQAKNSEAYSRTE-------SYDSTVISPLNLRMLQGAFI 689
            |||:                        ||...|.:.|       |.|.|  |.|:|..:.|.|.
Mouse   773 LDKL------------------------KNKWWYDKGECGSGGGDSKDKT--SALSLSNVAGVFY 811

  Fly   690 ALGVGSLA-AGVILLLEIVF 708
            .| :|.|. |.::.|:|..:
Mouse   812 IL-IGGLGLAMLVALIEFCY 830

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir40aNP_610140.4 Lig_chan-Glu_bd <265..336 CDD:463166 17/72 (24%)
Periplasmic_Binding_Protein_Type_2 297..>391 CDD:473866 20/96 (21%)
Periplasmic_Binding_Protein_Type_2 <496..637 CDD:473866 26/140 (19%)
Gria1NP_032191.2 PBP1_iGluR_AMPA_GluR1 26..392 CDD:380613 3/16 (19%)
PBP2_iGluR_AMPA_GluR1 406..787 CDD:270447 81/461 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 857..881
PDZ-binding 904..907
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.