Protein Alignment Lamp1 and lmp-1

DIOPT Version :10

• Sequence 1: NP_610111.3
• Gene: Lamp1 / 35411
• FlyBaseID: FBgn0032949
• Length: 318
• Species: Drosophila melanogaster
• Sequence 2: NP_509072.1
• Gene: lmp-1 / 180912
• WormBaseID: WBGene00003053
• Length: 237
• Species: Caenorhabditis elegans
• Alignment Length: 231
• Identity: 63/231 - (27%)
• Similarity: 100/231 - (43%)
• Gaps: 47/231 - (20%)

  Fly   112 NT--SCIMLQMAAQLNFTYEAREGNFTTGLYNIPSNASVE-DAEC----KSQTTQFIHLIWGPE- 168
            ||  :||:|....|.|..:..:.   ||..:.:..|.:|. :.:|    .:|:.|.:::.:.||
 Worm    28 NTGLTCIILDGDFQFNLVFNEKN---TTEKFTVTFNETVSVEGDCNGVRNNQSVQTLNIKFNPEG 89

  Fly   169 -----TSKQSLIMYFNKSNDTTVLSFMQIHLALLPEDFPDAKENQTVQLITRSD-----GAFKTP 223
                 ..:..|.:.|..|::   ::|..|...|            |.|   |:|     |.|...
 Worm    90 QSARYAKEWELDIVFGSSSN---VAFEIIDYTL------------TTQ---RTDLVPYFGKFVRD 136

  Fly   224 ENMSYHCTRVQKINMTETLDAE-QLIG--WISVSHVQVEAFRRANDTGFSVGHDCD----SSETS 281
            .|.:...|..| .|..:...|: .|:|  .|.:....|.||.:.|.|.|......:    .:.|:
 Worm   137 ANAAGDVTATQ-TNAYKCSTAKLGLVGGSTIDIKTSNVIAFAQMNGTVFPTDQVYEVCYLDARTN 200

  Fly   282 DVVPIAVGIALAALILVVLISYLCARRRSTSRGYMS 317
            :||||.||..||||::|||:.||..|.|:..:||.|
 Worm   201 EVVPIVVGACLAALVVVVLVGYLIGRARAKRQGYAS 236

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Lamp1	NP_610111.3	Lamp	106..262	CDD:480752	38/170 (22%)
lmp-1	NP_509072.1	None