DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lamp1 and LOC1268985

DIOPT Version :10

Sequence 1:NP_610111.3 Gene:Lamp1 / 35411 FlyBaseID:FBgn0032949 Length:318 Species:Drosophila melanogaster
Sequence 2:XP_061517587.1 Gene:LOC1268985 / 1268985 VectorBaseID:AGAMI1_013663 Length:277 Species:Anopheles gambiae


Alignment Length:277 Identity:56/277 - (20%)
Similarity:102/277 - (36%) Gaps:67/277 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 STISTSSTTTEKPITTRSTSTITPRSTTPSTESPSTTAPVISTTIAPQPYPQPSI----GAWNTS 114
            :|:.....:|:||..|:  .|:.|.|:: :|..||:.                |:    |:...:
Mosquito    24 NTLQLEGLSTKKPRITK--YTMKPTSSS-ATAVPSSL----------------SLYRLDGSSGAT 69

  Fly   115 CIMLQMAAQLNFTYEAREGNFTTGLYN--------IPSNASVEDAECKSQTTQFIHLIWGPETSK 171
            ||::|..|.|:..|..:        ||        :|....: ..||....:: |.:.|...|  
Mosquito    70 CILIQTDALLSIQYRDK--------YNEDKEADSFLPDQMDI-SGECWEDESR-ITMSWKGFT-- 122

  Fly   172 QSLIMYFNKSNDTTVLSFMQIHLALLPEDFPDAKENQTVQLITR---------SDGA--FKTPEN 225
              :.:||:|:..........:.||.       :..|:..:.|.|         ..|.  |.||..
Mosquito   123 --INIYFSKTPGGERWYVNSVDLAY-------SSSNKLFEHIDRPGLDVKLSTPPGTLLFPTPVG 178

  Fly   226 MSYHCTRVQKINM--TETLDAEQLIGWISVSHVQVEAFRRANDTGFSVGHDCDSSET--SDVVPI 286
            .||.|.....|.|  .:..|....:..:.:..:::::|.......:.....|.::.|  .:..||
Mosquito   179 KSYTCDNEVIITMFAQDENDKSGHLAKLYLRELRMQSFMYKAGNAWGPTFQCSATGTYRDETAPI 243

  Fly   287 AVGIALAALILVVLISY 303
            |||..||...:..::.|
Mosquito   244 AVGSTLAVATVCTVVGY 260

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lamp1NP_610111.3 Lamp 106..262 CDD:480752 34/180 (19%)
LOC1268985XP_061517587.1 None

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