DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment swm and rbm27

DIOPT Version :9

Sequence 1:NP_001260586.1 Gene:swm / 35235 FlyBaseID:FBgn0002044 Length:1063 Species:Drosophila melanogaster
Sequence 2:XP_002935312.3 Gene:rbm27 / 100498053 XenbaseID:XB-GENE-6037527 Length:1007 Species:Xenopus tropicalis


Alignment Length:1199 Identity:335/1199 - (27%)
Similarity:511/1199 - (42%) Gaps:328/1199 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MILENSDKLKDWLSVVLEPLCDADSSALARYVIALLKKDKSDKDLKRIMIEQLDVFLSEETTRFV 65
            |::||.|..|.||:.:|||:||||..|||.|||||:|||||:|:||.|..:||||||.:||..||
 Frog     1 MLIENVDAFKTWLAKLLEPICDADPMALANYVIALVKKDKSEKELKAICADQLDVFLQKETNGFV 65

  Fly    66 ERLFDAIASEEYLTVPAAPLITASSASTAELTVDQELALVIDGPQDDIEAVLVADSPPPPPKDNV 130
            :::||::.::.||  |....|.|.        :.||        :::|:..:....|.|.|....
 Frog    66 DKMFDSLHTKVYL--PPEETINAD--------LKQE--------KEEIKEEVPEKRPMPTPGMET 112

  Fly   131 IKPDSNQVKLEQASQDAREAEALAFISQEAGIAMHVPTDAK-PAFDQHKTKDSHNQQSASNYQHH 194
            .:.:.:..|.:..|.....::     |.|..|......|.| ..:|:|:.|          |...
 Frog   113 YEEERDSRKKKHPSPPRNRSD-----SSERRIREKKREDGKYREYDRHRDK----------YDWR 162

  Fly   195 HVRSASPPGRSSGVSGSGGGGPGGAGLAAGYADKENQPRDSRRRRASLRSRSRSRSRSNERAFRR 259
            ..||.||                                  .:.:::.|||||||.||.||...|
 Frog   163 RGRSKSP----------------------------------TKSKSTNRSRSRSRGRSRERESTR 193

  Fly   260 SRSRDRRVNEREKTQRQFRNKSPPGSQTDNRHHGRRNFDRRRIGGNADDRPRFGNNKSRRSHSRS 324
            :|.     |.:..:.:|        |.:.::|..|:.|:..|:...|...|        .|.|.:
 Frog   194 NRG-----NAKGNSVQQ--------SSSASQHRERQKFESERMELEAAYTP--------SSQSSA 237

  Fly   325 MSPERNARRNQNSPDRVQTAQANLIPAPVAPPAPVEHPAS-----------H-----------PR 367
            :|.|:.           .::....||:.|...||..||.|           |           |:
 Frog   238 ISAEQQ-----------YSSGGQAIPSTVTVIAPAHHPESTTEIWSNYYNNHNPPNSFSRIPPPK 291

  Fly   368 QRCRDFDEKGYCVRGETCPWDHGVNPVVFEGINNTSLMMSMREYNPDAPEIWARSGGPPPGAGQG 432
            :||||:||:|:||.|:.|.:|||.:|:|.:.::..|::       |..|.    .|.||||....
 Frog   292 RRCRDYDERGFCVLGDLCQYDHGNDPLVVDEVSLPSMI-------PFPPP----PGLPPPGILLP 345

  Fly   433 PVPPPT-QPGQTTINPFSGNVRPTTLMSGSGPSP-MGVPNPAD-YARNP---------GAPPQAA 485
            |:|.|. ......:.|.:....|..|.:.|.|.| .|:.|..| .|.|.         |.||:  
 Frog   346 PIPDPAHNMRMPVLRPHNQPPPPAVLPAPSLPLPHSGLLNNRDRLATNTVPSLAPIVGGLPPR-- 408

  Fly   486 MMPFP---------------FNPTAVT----------TPLQRQLIPIPVVDGAPTGGVAEVGKRR 525
             :|.|               :||.|.:          |.||||          ||.....:|...
 Frog   409 -IPPPNLLYSVSEHTYEPDGYNPEAPSLTNTGRPGYQTFLQRQ----------PTQRSNLIGLTS 462

  Fly   526 FELEDTVAIADVPTKRKVP-----------INSRL--------------GP---------RVNPN 556
            .:::.....|::..:.:.|           :|:|:              ||         :.|.|
 Frog   463 CDMDTAPRAANIVIQTEPPPPPPPPSTVGVVNNRVVVEPDRKRTAGNMDGPFAKKPWMDKQGNHN 527

  Fly   557 ---------MQQHNSSLELRKVPRGLNTIAHLNNHFAKFGKIVNIQVSYEGDPEAAIVTFSTHAE 612
                     :|..|:.||:||:|:.||.|..||.||:|||.||||||:::||||.|::.:.|:.|
 Frog   528 HNKTGFVKKIQYTNTKLEVRKIPQDLNNITKLNEHFSKFGTIVNIQVAFQGDPEGALIQYLTNDE 592

  Fly   613 ANVAYRSTEAVLNNRFIKVFWHNDSSGADVGQMNQ------------MGGGGGGGGRK------N 659
            |..|..|||||||||||:|.||.:::.....|..|            :...|.|..:|      |
 Frog   593 ARRAISSTEAVLNNRFIRVLWHRENNEQQHTQPQQHHLTTASTTQTPIAPAGQGHLQKVIPKAIN 657

  Fly   660 ASQYHLHNVPAVPTPNADGAKISNANPLTEAGAGNIGTPATEQANTAAPASMRLKLNTTTAGGSA 724
            ...|.|:.:|    |.....:.|::...|...|.|  .|::.:.|...|.|..|.....::|   
 Frog   658 QGSYVLNKLP----PKQRLGQTSSSPSDTTYLASN--QPSSGEENQTLPPSTSLSKMVYSSG--- 713

  Fly   725 GGAAGAGAPGSGRPLNPAANA---ASIRKKQEEQQKAVHQLANGLRKRKQELLQSYMKQMKTALE 786
                  |...|.:|..|:...   .:::||||     ..:|...:||:|||:|:   ||::....
 Frog   714 ------GLKTSNKPAAPSKTVDVQDALKKKQE-----ALKLQQDMRKKKQEMLE---KQIECQKM 764

  Fly   787 LVERMDQ----QDPQRAPTLQTIKVLQMTIDKLRKEIKADQDQLQAQMQQQQQQQQPPVKKTKEQ 847
            |:.|:::    :..:|...::|:|.|...|.:::.|:|.    |.|          |...|:|.:
 Frog   765 LISRLEKNKSMKAEERTEIMKTLKTLDEKISQVKDELKT----LSA----------PSKLKSKTE 815

  Fly   848 QKKELLDMELELIAQQQEGNDTTAIQKRLEELQ---RNLGVGSAANNKSTHYAPASGAPGGGAGR 909
            .:|||||.|::...:...|.|||.::|:|..||   ..||:...:..|:        .||...||
 Frog   816 AQKELLDAEMDFHKRLSSGEDTTELRKKLSLLQVEAARLGILPPSRGKT--------LPGQSRGR 872

  Fly   910 KRPNLPEGPTR-----VDRRPKAIVVTGFAAEEADFVLGHFKNFGEISKHDVDREIPQLILSYAT 969
            .|.:...|...     ||.|||.|.|.||..:|.:.:|.||..||::.....:...|.:||::.|
 Frog   873 GRGHGTRGRGSLSHMVVDHRPKTISVVGFYDKEKEELLQHFAKFGDVEDLKEEEFPPSVILTFKT 937

  Fly   970 RLNAEQAVLRGKMYKDKRLQISWAPVVTPAPAPMAAPVEKSAAPGDMSVSLENPKQLIQSVSESE 1034
            |..||.|..:|..:|.::||:||....||:                :|..:|..:...:....|:
 Frog   938 RQEAENAANQGSKFKGRKLQVSWHKPKTPS----------------ISTEIEEDETKEEEAETSD 986

  Fly  1035 SLLGSDTLPELRLEDEEEDEESEDRSWRR 1063
            ..|..|       |||:|||: |.|||||
 Frog   987 PFLHDD-------EDEDEDED-ESRSWRR 1007

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
swmNP_001260586.1 RRM1_RBM26_like 561..634 CDD:240703 43/72 (60%)
RRM2_RBM26_like 921..992 CDD:240704 27/70 (39%)
rbm27XP_002935312.3 PWI 7..72 CDD:413375 40/64 (63%)
zf-CCCH 292..314 CDD:395517 12/21 (57%)
RRM_RBM27 541..616 CDD:409939 45/74 (61%)
SbcC <731..>854 CDD:223496 41/144 (28%)
RRM_SF 889..960 CDD:418427 27/70 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG48662
OrthoDB 1 1.010 - - D324834at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR14398
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3653
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.060

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