Protein Alignment RtcB and rtcb

DIOPT Version :10

• Sequence 1: NP_609965.1
• Gene: RtcB / 35220
• FlyBaseID: FBgn0032781
• Length: 506
• Species: Drosophila melanogaster
• Sequence 2: NP_001025674.1
• Gene: rtcb / 595066
• XenbaseID: XB-GENE-974751
• Length: 505
• Species: Xenopus tropicalis
• Alignment Length: 503
• Identity: 422/503 - (83%)
• Similarity: 464/503 - (92%)
• Gaps: 0/503 - (0%)

  Fly     4 RPYNDELRYLEKVSDHCWRIKKGFQPNMNVEGCFYVNSRLERLMLEELKNSCRPGAVGGFLPGVK 68
            |.|||||:||:|:..:||||:|||.|||.|||.||||..||:||.|||:|:.|.||.|||||.:|
 Frog     3 RSYNDELQYLDKIHKNCWRIRKGFVPNMQVEGVFYVNDPLEKLMFEELRNASRGGAAGGFLPAMK 67

  Fly    69 QIANVAALPGIVGRSIGLPDIHSGYGFAIGNMAAFDMNDPLSVVSPGGVGFDINCGVRLLRTNLY 133
            ||.||||||||:.|||||||:||||||||||||||||::|.:||||||||||||||||||||||.
 Frog    68 QIGNVAALPGIIHRSIGLPDVHSGYGFAIGNMAAFDMDNPEAVVSPGGVGFDINCGVRLLRTNLD 132

  Fly   134 EKDVQPVKEQLAQSLFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYG 198
            |.|||||||||||::||||||||||||:|||.|:|||||||||:||||||||.||||||||||||
 Frog   133 ESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYG 197

  Fly   199 RMLNADPAKVSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDKWSASKMGIEEKGQVVVMIHSGS 263
            |||.|||:|||.:||||||||||||||||||||:||||:|||:::|.||||:.||||.|||||||
 Frog   198 RMLQADPSKVSSKAKKRGLPQLGTLGAGNHYAEVQVVDDIYDEYAAKKMGIDHKGQVCVMIHSGS 262

  Fly   264 RGFGHQVATDALVQMEKAMKRDKIETNDRQLACARINSVEGQDYLKAMAAAANFAWVNRSSMTFL 328
            ||.||||||||||.||||||||||..||||||||||:|.|||||||.||||.|:|||||||||||
 Frog   263 RGLGHQVATDALVAMEKAMKRDKITVNDRQLACARISSAEGQDYLKGMAAAGNYAWVNRSSMTFL 327

  Fly   329 TRQAFAKMFNTTPDDLDMHVIYDVSHNIAKVENHMVDGKERKLLVHRKGSTRAFPPHHPLIPVDY 393
            |||||:|:|||||||||:||||||||||||||.|:|||||:.|||||||||||||||||||||||
 Frog   328 TRQAFSKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKEKTLLVHRKGSTRAFPPHHPLIPVDY 392

  Fly   394 QLTGQPVLVGGTMGTCSYVLTGTEQGMQETFGSTCHGAGRALSRAKSRRNLDYKDVLDKLDQLGI 458
            ||||||||:||||||||||||||:|||.||||:|||||||||||||||||||::||||||..|||
 Frog   393 QLTGQPVLIGGTMGTCSYVLTGTDQGMTETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADLGI 457

  Fly   459 AIRVASPKLVMEEAPESYKDVTDVVDTCHAAGISKKCIKMRPIAVIKG 506
            |||||||||||||||||||:|||||:|||.||||||.||:||||||||
 Frog   458 AIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RtcB	NP_609965.1	RtcB	69..506	CDD:460080	377/436 (86%)
rtcb	NP_001025674.1	RtcB	12..505	CDD:441296	413/492 (84%)