Protein Alignment RtcB and Rtcb

DIOPT Version :10

• Sequence 1: NP_609965.1
• Gene: RtcB / 35220
• FlyBaseID: FBgn0032781
• Length: 506
• Species: Drosophila melanogaster
• Sequence 2: NP_997497.2
• Gene: Rtcb / 362855
• RGDID: 1303261
• Length: 505
• Species: Rattus norvegicus
• Alignment Length: 503
• Identity: 429/503 - (85%)
• Similarity: 464/503 - (92%)
• Gaps: 0/503 - (0%)

  Fly     4 RPYNDELRYLEKVSDHCWRIKKGFQPNMNVEGCFYVNSRLERLMLEELKNSCRPGAVGGFLPGVK 68
            |.|||||::|:|::.:||||||||.|||.|||.||||..||:||.|||:|:||.|.||||||.:|
  Rat     3 RNYNDELQFLDKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVGGFLPAMK 67

  Fly    69 QIANVAALPGIVGRSIGLPDIHSGYGFAIGNMAAFDMNDPLSVVSPGGVGFDINCGVRLLRTNLY 133
            ||.|||||||||.|||||||:|||||||||||||||||||.:||||||||||||||||||||||.
  Rat    68 QIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLD 132

  Fly   134 EKDVQPVKEQLAQSLFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYG 198
            |.|||||||||||::||||||||||||:|||||:|||||||||:||||||||.||||||||||||
  Rat   133 ESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYG 197

  Fly   199 RMLNADPAKVSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDKWSASKMGIEEKGQVVVMIHSGS 263
            |||.|||.|||.||||||||||||||||||||||||||||:::::|.||||:.||||.|||||||
  Rat   198 RMLQADPNKVSPRAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGS 262

  Fly   264 RGFGHQVATDALVQMEKAMKRDKIETNDRQLACARINSVEGQDYLKAMAAAANFAWVNRSSMTFL 328
            ||.||||||||||.||||||||||..||||||||||.|.|||||||.||||.|:|||||||||||
  Rat   263 RGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAAAGNYAWVNRSSMTFL 327

  Fly   329 TRQAFAKMFNTTPDDLDMHVIYDVSHNIAKVENHMVDGKERKLLVHRKGSTRAFPPHHPLIPVDY 393
            |||||||:|||||||||:||||||||||||||.|:||||||.|||||||||||||||||||.|||
  Rat   328 TRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHHPLIAVDY 392

  Fly   394 QLTGQPVLVGGTMGTCSYVLTGTEQGMQETFGSTCHGAGRALSRAKSRRNLDYKDVLDKLDQLGI 458
            ||||||||:||||||||||||||||||.||||:|||||||||||||||||||::||||||..:||
  Rat   393 QLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGI 457

  Fly   459 AIRVASPKLVMEEAPESYKDVTDVVDTCHAAGISKKCIKMRPIAVIKG 506
            |||||||||||||||||||:|||||:|||.||||||.||:||||||||
  Rat   458 AIRVASPKLVMEEAPESYKNVTDVVNTCHDAGISKKAIKLRPIAVIKG 505

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RtcB	NP_609965.1	RtcB	69..506	CDD:460080	383/436 (88%)
Rtcb	NP_997497.2	RtcB	12..505	CDD:441296	421/492 (86%)