DRSC/TRiP Functional Genomics Resources

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Protein Alignment brat and Trim71

DIOPT Version :10

Sequence 1:NP_001188842.2 Gene:brat / 35197 FlyBaseID:FBgn0010300 Length:1061 Species:Drosophila melanogaster
Sequence 2:NP_001035968.1 Gene:Trim71 / 636931 MGIID:2685973 Length:855 Species:Mus musculus


Alignment Length:1024 Identity:242/1024 - (23%)
Similarity:391/1024 - (38%) Gaps:311/1024 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 SSSSCSSSSSSSSSSSSSSSSTSGLSGCGSTSSSV-------------ISANNVASSNGPG---- 131
            |.:..||:||:|||||.:|:|::|..|.|:.:..:             :.|:.:.:..|.|    
Mouse    21 SPAPLSSNSSASSSSSQTSTSSAGGGGPGAAARRLHVLPCLHAFCRPCLEAHRLPAPGGAGPAEA 85

  Fly   132 ---------------------------VIGSNL-------------QSSNNGGNSGISSLVVGAG 156
                                       .:.|||             ::...||..|      |||
Mouse    86 LKLRCPVCDQKVVLAEAAGMDALPSSAFLLSNLLDAVVATAEEPPPKNGRAGGGPG------GAG 144

  Fly   157 KGSNSSSNSSSSNTSANGSPPR-------------------CTACKSKCSDAVAKCFECQSYLCA 202
            ..||...::......|....|:                   |::| .:.:.|.::|.:||.:||.
Mouse   145 GHSNHRHHAHHPAQRAAAPAPQPPPGPAASPGSLLMRRPHGCSSC-DEGNAASSRCLDCQEHLCD 208

  Fly   203 NCVTAHEFMHCFNGHNVCLIKGFEASTTGTPLSVGSPSNNPASNEFKYASSLTMMLQQQQQLDSQ 267
            |||.||:.:.....|.:         ..|.|        .||:     ||:              
Mouse   209 NCVRAHQRVRLTKDHYI---------ERGPP--------GPAA-----ASA-------------- 237

  Fly   268 QQQQQQQLLPAQPMSQLSKIVLAAAAQANSQEQQREDSIYGSLHPQQQQQQQQQQQRQLFCPRHK 332
                .|||....|.:.....:|                   |:.|          :|..||..|.
Mouse   238 ----AQQLGLGPPFAGAPFSIL-------------------SVFP----------ERLGFCQHHD 269

  Fly   333 QELLKFSCRTCCILVCKECIVLEHSTGLHELENVQ-----SPGMTTSTGSTANE--SALQTLLAD 390
            .|:|...|.||.:.:|:||.:..|  |.|....:|     |..:|....:.|.:  .||| |..:
Mouse   270 DEVLHLYCDTCSVPICRECTLGRH--GGHSFAYLQDALQDSRALTIQLLADAQQGRQALQ-LSIE 331

  Fly   391 MRGKIGEIVGIAGNSDQNLTK-VKLQYQKAHNELNETHQFFASMLDERKTELLKELETLYTAKVN 454
            ....:.|.|.:.....|:..| |..:::||              |::|:.|||.::|.:...|..
Mouse   332 QAQTVAEQVEMKAKVVQSEVKAVTARHKKA--------------LEDRECELLWKVEKIRQVKAK 382

  Fly   455 SNNSWQQRSRDLIDKGLATCEAVERSPAPPSSLLTEALLLRKSLEQQLQ-----TGIQEMQLPFE 514
            |.....::.|..:.|..:|..||::......:|  :.||.|..:..|:|     .|:.:.|....
Mouse   383 SLFLQVEKLRQSLSKLESTISAVQQVLEEGRAL--DILLARDRMLAQVQELKTIRGLLQPQEDDR 445

  Fly   515 IEFMSNYQSIQAGVRNTFGYIRANSSDGGPTGMSLTSNGHGKQPPIARPT-----QSASNSSASS 574
            |.|....|::...:: :.|::.:                 |...|:.:.|     ::.....||.
Mouse   446 IMFTPPDQALYLALK-SIGFVSS-----------------GAFAPLTKATGDGIKRALQGKVASF 492

  Fly   575 AGSGHHGHHQQSHHHGHHNHHQTAHHQQLQAQSSLHGLGLGLSGASLLDSSSSAGGAVGAFSNGG 639
            ...|:       .|.|...|                      ||..|:                .
Mouse   493 TVMGY-------DHDGEPRH----------------------SGGDLM----------------S 512

  Fly   640 LLLGGRDRNALAVEQHFGELMPKRGGGGYTGS-----NGSATSAVAHYNPYEKWSNGGSDNLFSS 699
            :::.|.|.|.      ||..:..:..|.|..|     .|....:|..||.:.:      ::.|..
Mouse   513 VVVLGPDGNL------FGAEVSDQQNGTYIVSYRPQLEGEHLVSVTLYNQHIE------NSPFKV 565

  Fly   700 VTSGVSGSSAVADAFASLSAVGGSVVSGAGAG------GSTVSSESLL---DLTNKLLSATIYPP 755
            |..  ||.|.|......||.  ||  .|.|.|      |.:|..|..:   |.:|..:.  ::.|
Mouse   566 VVK--SGRSYVGIGLPGLSF--GS--EGDGEGKLCRPWGVSVDKEGFIIVADRSNNRIQ--VFKP 622

  Fly   756 KSQIKRQKMIYHCKFGEFGVMEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGEC 820
            ...       :|.|||..|...|||..|:|||.:|...|||||.:|||||||..||:|..:|||.
Mouse   623 CGS-------FHHKFGTLGSRPGQFDRPAGVACDASRRIIVADKDNHRIQIFTFEGQFLLKFGEK 680

  Fly   821 GKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFG--ATILQH---PRGVTVD 880
            |.::.|..||..|| |.:.|.|:|:: :..|:||::...|.|:.|:|  .::.:|   ||||..:
Mouse   681 GTKNGQFNYPWDVA-VNSEGKILVSD-TRNHRIQLFGPDGVFLNKYGFEGSLWKHFDSPRGVAFN 743

  Fly   881 NKGRIIVVECKVMRVIIFD---QNGNVLHKFGCSKHLEF--PNGVVVNDKQEIFISDNRAHCVKV 940
            |:|.::|.:....|:::..   |:...|...| |.:.:|  |.||.|:.:..|.::|:|.|.|::
Mouse   744 NEGHLVVTDFNNHRLLVIHPDCQSARFLGSEG-SGNGQFLRPQGVAVDQEGRIIVADSRNHRVQM 807

  Fly   941 FNYEGQYLRQIG----GEGITNYPIGVGINSNGEILIADNHNNFNLTIF 985
            |...|.:|.:.|    |.|..:.|.|:.:..:|.|::.|..|| .:.||
Mouse   808 FEANGSFLCKFGAQGSGFGQMDRPSGIAVTPDGLIVVVDFGNN-RILIF 855

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bratNP_001188842.2 Bbox1_BRAT-like 178..222 CDD:380871 14/62 (23%)
Bbox2_BRAT-like 326..366 CDD:380856 14/39 (36%)
CC_brat-like 382..503 CDD:467844 29/121 (24%)
NHL_brat_like 760..1030 CDD:271329 86/240 (36%)
NHL repeat 783..819 CDD:271329 21/35 (60%)
NHL repeat 830..871 CDD:271329 14/42 (33%)
NHL repeat 874..910 CDD:271329 10/38 (26%)
NHL repeat 914..954 CDD:271329 14/45 (31%)
NHL repeat 959..997 CDD:271329 9/27 (33%)
NHL repeat 1002..1027 CDD:271329
Trim71NP_001035968.1 RING-HC_TRIM71_C-VII 1..101 CDD:438251 18/79 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 26..48 12/21 (57%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 127..177 10/55 (18%)
Bbox1_TRIM71_C-VII 185..227 CDD:380870 14/51 (27%)
Bbox2_TRIM71_C-VII 264..309 CDD:380854 15/46 (33%)
CC_brat-like 314..429 CDD:475168 30/131 (23%)
Filamin 466..567 25/174 (14%)
Filamin 469..564 CDD:395505 23/151 (15%)
NHL_TRIM71_like 571..855 CDD:271324 99/300 (33%)
NHL 1 580..623 12/48 (25%)
NHL repeat 596..635 CDD:271324 10/47 (21%)
NHL 2 627..670 25/42 (60%)
NHL repeat 643..682 CDD:271324 23/38 (61%)
NHL 3 674..717 16/44 (36%)
NHL repeat 690..726 CDD:271324 13/37 (35%)
WD40 repeat 691..727 CDD:293791 13/37 (35%)
NHL 4 721..764 11/42 (26%)
NHL repeat 734..774 CDD:271324 10/39 (26%)
WD40 repeat 737..774 CDD:293791 10/36 (28%)
NHL 5 768..811 14/43 (33%)
WD40 repeat 782..821 CDD:293791 13/38 (34%)
NHL repeat 783..813 CDD:271324 10/29 (34%)
NHL 6 815..855 11/40 (28%)
NHL repeat 829..855 CDD:271324 7/26 (27%)
WD40 repeat 831..855 CDD:293791 7/24 (29%)
Blue background indicates that the domain is not in the aligned region.

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