DRSC/TRiP Functional Genomics Resources

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Protein Alignment brat and trim2b

DIOPT Version :10

Sequence 1:NP_001188842.2 Gene:brat / 35197 FlyBaseID:FBgn0010300 Length:1061 Species:Drosophila melanogaster
Sequence 2:XP_009304581.1 Gene:trim2b / 558046 ZFINID:ZDB-GENE-090312-70 Length:669 Species:Danio rerio


Alignment Length:785 Identity:190/785 - (24%)
Similarity:318/785 - (40%) Gaps:222/785 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   326 LFCPRHKQELLKFSCRTCCILVCKECIVLEHSTGLHELENVQSPGMTTSTGSTANESALQTLLAD 390
            |.|.:||.::....|..|...||::|:..||:.  |..:::              |.|:...||.
Zfish    28 LICSQHKGKVSALYCLVCENAVCEDCMNGEHAE--HPTDSL--------------EKAVDQQLAA 76

  Fly   391 MRGKIGEIVGIAGNSDQNLTKVK--LQY----------------QKAHNELNETHQFFASMLDER 437
            ::.|:       .::...|.:::  :||                :..|:..:|.|:    .||.|
Zfish    77 LQDKV-------DSAKNRLPQIREAVQYLREILQQLNSQRSSIEEDIHSSFSELHK----TLDTR 130

  Fly   438 KTELLKELETLYTAKVNSNNSWQQRSRDLIDKGLATCEAVERSPAPPSSLLTEALLLRKSLEQQL 502
            |:.||.|||..|..|                                          :|.|:.||
Zfish   131 KSVLLMELEVTYGLK------------------------------------------QKVLQAQL 153

  Fly   503 QTGIQEMQLPFEIEFMSNY------QSIQAGVRNTFGYIRANSSDGGPTGMSLTSNGHGKQPPIA 561
            .|.:||       |...||      :::..|.:.:  .::|:...|...| .|:|.|...||   
Zfish   154 DTLLQE-------ESAINYNCSLTSEALDGGSKAS--VLQAHKEAGERLG-DLSSQGLPLQP--- 205

  Fly   562 RPTQSASNSSASSAGSGHHGHHQQSHHHGHHNHHQTAHHQQLQA-QSSLHGLGLGLSGASLLDSS 625
                                          ..:.|.....:::. :.|:|.||..::..::...:
Zfish   206 ------------------------------EENDQLDLMMEIEGLRKSIHNLGTIVTTNAVASQT 240

  Fly   626 SSAGGA-----VGAFSN---------GGLLLGGRDRNALAVEQHF--------GELMPKRGGG-- 666
            .::|..     ||..::         |||...|   ||:...:.:        ||::..:.|.  
Zfish   241 EASGDGLEQCIVGQPASVIITTRDKAGGLCKTG---NAIISAEVYTPDGSIADGEIVDMKNGTYE 302

  Fly   667 -GYT-GSNGSATSAVAHY------NPYEKWSNGGSDNLFSSVTSGVSGSSAVADAFA---SLSAV 720
             .|| ...|:.:.|:..|      :|::...:...|:..::.|:..:.|:..:|..|   |..:.
Zfish   303 FQYTVKKEGNFSLALRLYDQHIKGSPFQLKVSSSPDDSPTTTTAANAASTGSSDGGARKRSAKSP 367

  Fly   721 GG-SVVSGAGAGGSTVSSESLLDLTNKLLSATIYPPKSQIK--RQKMIYHCKFGEFGVMEGQFTE 782
            |. |...|...|||..|:                 ||.::.  ...:|:  :.|..|..:|:||.
Zfish   368 GSRSRQKGVRRGGSLFST-----------------PKKRVNPIEDDLIF--RIGTKGRNKGEFTN 413

  Fly   783 PSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTER 847
            ..|||..::..|::||:||..:|||...|.|:.:||..|:...||..|..|||..| ||||:.:.
Zfish   414 LQGVAACSEGRILIADSNNQCVQIFSNTGEFQSRFGVRGRSPGQLQRPTGVAVHPN-GDIIIADY 477

  Fly   848 SPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGC-- 910
            . ...:.|::..|::..|.|:..|..|:||:||..|.:|||:.|...|.||..:|.::.|||.  
Zfish   478 D-NKWVSIFSSEGKYKAKLGSGRLMGPKGVSVDQNGHVIVVDNKACTVFIFQPSGKLITKFGSRG 541

  Fly   911 --SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIG----GEGITNYPIGVGINSNG 969
              .:....|:...||:..||.|:|...|.|||||.:|::|.:.|    |.|..|.|.||.::.||
Zfish   542 NGDRQFAGPHFAAVNNNNEIIITDFHNHSVKVFNADGEFLLKFGSNGEGNGQFNAPTGVAVDVNG 606

  Fly   970 EILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFD-------VALMDDGSVVLA-SKDYRLYI 1026
            .|::|| ..|..:.:|...|..:|.:.:..      |       :||..||.||:| |.::...:
Zfish   607 NIIVAD-WGNSRIQVFDGSGSFLSYINTAA------DPLYGPQGLALTSDGHVVVADSGNHCFKV 664

  Fly  1027 YRYVQ 1031
            |||:|
Zfish   665 YRYLQ 669

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bratNP_001188842.2 Bbox1_BRAT-like 178..222 CDD:380871
Bbox2_BRAT-like 326..366 CDD:380856 12/39 (31%)
CC_brat-like 382..503 CDD:467844 24/138 (17%)
NHL_brat_like 760..1030 CDD:271329 97/287 (34%)
NHL repeat 783..819 CDD:271329 14/35 (40%)
NHL repeat 830..871 CDD:271329 13/40 (33%)
NHL repeat 874..910 CDD:271329 16/35 (46%)
NHL repeat 914..954 CDD:271329 16/43 (37%)
NHL repeat 959..997 CDD:271329 12/37 (32%)
NHL repeat 1002..1027 CDD:271329 9/32 (28%)
trim2bXP_009304581.1 Bbox_SF 28..67 CDD:469587 12/54 (22%)
CC_brat-like 73..193 CDD:475168 33/181 (18%)
IG_FLMN 237..334 CDD:214720 18/99 (18%)
NHL_TRIM2_like 396..669 CDD:271330 98/283 (35%)
NHL repeat 414..453 CDD:271330 15/38 (39%)
NHL repeat 461..500 CDD:271330 13/40 (33%)
NHL repeat 503..540 CDD:271330 17/36 (47%)
NHL repeat 547..588 CDD:271330 16/40 (40%)
NHL repeat 594..636 CDD:271330 13/48 (27%)
NHL repeat 639..665 CDD:271330 8/25 (32%)
Blue background indicates that the domain is not in the aligned region.

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