DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG10348 and prdm16

DIOPT Version :9

Sequence 1:NP_001286059.1 Gene:CG10348 / 35132 FlyBaseID:FBgn0032707 Length:540 Species:Drosophila melanogaster
Sequence 2:XP_031761546.1 Gene:prdm16 / 100485690 XenbaseID:XB-GENE-991670 Length:1307 Species:Xenopus tropicalis


Alignment Length:570 Identity:175/570 - (30%)
Similarity:239/570 - (41%) Gaps:183/570 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MREKD------HS--PRKMLPS-PKQGCVYPAL-------GLI----PTSYISHVPYDLASSASV 45
            |:||.      ||  |.:.||: |..  :|||.       .|:    |.|     |.||   ..|
 Frog   742 MQEKKMGSLPYHSMFPFQFLPNFPHS--LYPAFTDRTMNHNLLVKAEPKS-----PRDL---QKV 796

  Fly    46 AATSSSSTSPTTT------SATTTGRLQHQHSHQQHQTLNHHAKGKRRSSFDQPLDLRLAHKRKT 104
            .:|||.|....||      ||....|:....|                |..:|||||.::::.: 
 Frog   797 GSTSSESPFDLTTKPKEIKSALIPPRVLAPQS----------------SGEEQPLDLSISNRSR- 844

  Fly   105 DLVDQGPMEDENSNLIMFASELAVAQQKEKELNNNHIAASLADLGFDMSRKMLRALREGGAGGGG 169
                                   .:|...:|...|||.:....:..||..|:             
 Frog   845 -----------------------ASQNGARETRRNHIYSDRKMMMNDMLSKI------------- 873

  Fly   170 GGGGGGGGGGGPPNAPPLTPPQCSIPAVHPTLLEAMTKNLPLQYRNVFAGVLPGKVNSPAASSSP 234
                                ||..:|           :..||.|                |..||
 Frog   874 --------------------PQSQLP-----------QQPPLHY----------------AKPSP 891

  Fly   235 TGADFPFRHPLKKCELTWPPPTEQLQLELPHPNPKLSPVLPHPQ---LQDYQTRRKNKARTAATG 296
            ...| |....::|.::|.|..|.:.:...|      ||:|.|||   :::...:.:|.|...|..
 Frog   892 FFMD-PIYSRVEKRKVTDPVGTMKEKYLRP------SPLLFHPQMSAIENMTEKLENFANLKADT 949

  Fly   297 GNATPNLP------------------QRNKDRYTCKFCGKVFPRSANLTRHLRTHTGEQPYKCKY 343
            |::...||                  ::.|:||||::|||:||||||||||||||||||||:|||
 Frog   950 GSSLQPLPHHPFNFRSPPTTLSDSILRKGKERYTCRYCGKIFPRSANLTRHLRTHTGEQPYRCKY 1014

  Fly   344 CERSFSISSNLQRHVRNIHNKERPFKCEICERCFGQQTNLDRHLKKHESDAVSLSALSGVSERMH 408
            |:||||||||||||||||||||:||||.:|.|||||||||||||||||.:.|.:|..|||....|
 Frog  1015 CDRSFSISSNLQRHVRNIHNKEKPFKCHLCNRCFGQQTNLDRHLKKHEHENVPVSQHSGVITNHH 1079

  Fly   409 CIRRFCEN----------PTEESYFEEIRSFMGKVTQQQQQQQQQQQHDQQQQQHQSTATSASSS 463
            .......|          ..|:|||.|||:|:.. ::..|.....::..:.|....|...|..:.
 Frog  1080 GTSVSSPNSESENHALLDEKEDSYFSEIRNFIAN-SELNQTASLAEKRTEIQDIDSSKCLSLVNQ 1143

  Fly   464 CSSSRDTPTSSHEEADHAPATSTA----DTAAPS----SSRDQEEEDSQP 505
            .....|.......|.|:...:.|.    :|.:||    .:.:::|||.:|
 Frog  1144 KPDDADEEEDDELEEDYEDGSLTGKSQDETVSPSMENQETYEEDEEDEEP 1193

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10348NP_001286059.1 COG5048 300..>363 CDD:227381 50/80 (63%)
zf-C2H2 311..333 CDD:278523 18/21 (86%)
C2H2 Zn finger 313..333 CDD:275368 16/19 (84%)
zf-H2C2_2 325..349 CDD:290200 21/23 (91%)
C2H2 Zn finger 341..362 CDD:275368 19/20 (95%)
zf-H2C2_2 353..377 CDD:290200 19/23 (83%)
zf-C2H2 368..390 CDD:278523 18/21 (86%)
C2H2 Zn finger 370..390 CDD:275368 16/19 (84%)
prdm16XP_031761546.1 SET 61..222 CDD:394802
C2H2 Zn finger 232..258 CDD:275368
zf-C2H2 278..300 CDD:395048
C2H2 Zn finger 280..300 CDD:275368
zf-H2C2_2 292..316 CDD:404364
C2H2 Zn finger 308..328 CDD:275368
C2H2 Zn finger 336..387 CDD:275368
zf-C2H2 396..418 CDD:395048
C2H2 Zn finger 398..418 CDD:275368
C2H2 Zn finger 426..449 CDD:275368
C2H2 Zn finger 458..476 CDD:275368
zf-C2H2 982..1004 CDD:395048 18/21 (86%)
C2H2 Zn finger 984..1004 CDD:275368 16/19 (84%)
zf-H2C2_2 996..1020 CDD:404364 21/23 (91%)
SUF4-like 1012..>1067 CDD:411020 46/54 (85%)
C2H2 Zn finger 1012..1038 CDD:411020 24/25 (96%)
C2H2 Zn finger 1012..1033 CDD:275368 19/20 (95%)
C2H2 Zn finger 1041..1062 CDD:411020 17/20 (85%)
C2H2 Zn finger 1041..1061 CDD:275368 16/19 (84%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 54 1.000 Domainoid score I11069
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D254483at33208
OrthoFinder 1 1.000 - - FOG0002720
OrthoInspector 1 1.000 - - otm47956
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.010

Return to query results.
Submit another query.