DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG10348 and prdm16

DIOPT Version :10

Sequence 1:NP_609904.2 Gene:CG10348 / 35132 FlyBaseID:FBgn0032707 Length:540 Species:Drosophila melanogaster
Sequence 2:XP_031761546.1 Gene:prdm16 / 100485690 XenbaseID:XB-GENE-991670 Length:1307 Species:Xenopus tropicalis


Alignment Length:570 Identity:175/570 - (30%)
Similarity:239/570 - (41%) Gaps:183/570 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MREKD------HS--PRKMLPS-PKQGCVYPAL-------GLI----PTSYISHVPYDLASSASV 45
            |:||.      ||  |.:.||: |..  :|||.       .|:    |.|     |.||   ..|
 Frog   742 MQEKKMGSLPYHSMFPFQFLPNFPHS--LYPAFTDRTMNHNLLVKAEPKS-----PRDL---QKV 796

  Fly    46 AATSSSSTSPTTT------SATTTGRLQHQHSHQQHQTLNHHAKGKRRSSFDQPLDLRLAHKRKT 104
            .:|||.|....||      ||....|:....|                |..:|||||.::::.: 
 Frog   797 GSTSSESPFDLTTKPKEIKSALIPPRVLAPQS----------------SGEEQPLDLSISNRSR- 844

  Fly   105 DLVDQGPMEDENSNLIMFASELAVAQQKEKELNNNHIAASLADLGFDMSRKMLRALREGGAGGGG 169
                                   .:|...:|...|||.:....:..||..|:             
 Frog   845 -----------------------ASQNGARETRRNHIYSDRKMMMNDMLSKI------------- 873

  Fly   170 GGGGGGGGGGGPPNAPPLTPPQCSIPAVHPTLLEAMTKNLPLQYRNVFAGVLPGKVNSPAASSSP 234
                                ||..:|           :..||.|                |..||
 Frog   874 --------------------PQSQLP-----------QQPPLHY----------------AKPSP 891

  Fly   235 TGADFPFRHPLKKCELTWPPPTEQLQLELPHPNPKLSPVLPHPQ---LQDYQTRRKNKARTAATG 296
            ...| |....::|.::|.|..|.:.:...|      ||:|.|||   :::...:.:|.|...|..
 Frog   892 FFMD-PIYSRVEKRKVTDPVGTMKEKYLRP------SPLLFHPQMSAIENMTEKLENFANLKADT 949

  Fly   297 GNATPNLP------------------QRNKDRYTCKFCGKVFPRSANLTRHLRTHTGEQPYKCKY 343
            |::...||                  ::.|:||||::|||:||||||||||||||||||||:|||
 Frog   950 GSSLQPLPHHPFNFRSPPTTLSDSILRKGKERYTCRYCGKIFPRSANLTRHLRTHTGEQPYRCKY 1014

  Fly   344 CERSFSISSNLQRHVRNIHNKERPFKCEICERCFGQQTNLDRHLKKHESDAVSLSALSGVSERMH 408
            |:||||||||||||||||||||:||||.:|.|||||||||||||||||.:.|.:|..|||....|
 Frog  1015 CDRSFSISSNLQRHVRNIHNKEKPFKCHLCNRCFGQQTNLDRHLKKHEHENVPVSQHSGVITNHH 1079

  Fly   409 CIRRFCEN----------PTEESYFEEIRSFMGKVTQQQQQQQQQQQHDQQQQQHQSTATSASSS 463
            .......|          ..|:|||.|||:|:.. ::..|.....::..:.|....|...|..:.
 Frog  1080 GTSVSSPNSESENHALLDEKEDSYFSEIRNFIAN-SELNQTASLAEKRTEIQDIDSSKCLSLVNQ 1143

  Fly   464 CSSSRDTPTSSHEEADHAPATSTA----DTAAPS----SSRDQEEEDSQP 505
            .....|.......|.|:...:.|.    :|.:||    .:.:::|||.:|
 Frog  1144 KPDDADEEEDDELEEDYEDGSLTGKSQDETVSPSMENQETYEEDEEDEEP 1193

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10348NP_609904.2 zf-C2H2 311..333 CDD:395048 18/21 (86%)
C2H2 Zn finger 313..333 CDD:275368 16/19 (84%)
zf-H2C2_2 325..349 CDD:463886 21/23 (91%)
C2H2 Zn finger 341..362 CDD:275368 19/20 (95%)
zf-C2H2 368..390 CDD:395048 18/21 (86%)
C2H2 Zn finger 370..390 CDD:275368 16/19 (84%)
prdm16XP_031761546.1 SET 61..222 CDD:394802
C2H2 Zn finger 232..258 CDD:275368
zf-C2H2 278..300 CDD:395048
C2H2 Zn finger 280..300 CDD:275368
zf-H2C2_2 292..316 CDD:463886
C2H2 Zn finger 308..328 CDD:275368
C2H2 Zn finger 336..387 CDD:275368
zf-C2H2 396..418 CDD:395048
C2H2 Zn finger 398..418 CDD:275368
C2H2 Zn finger 426..449 CDD:275368
C2H2 Zn finger 458..476 CDD:275368
zf-C2H2 982..1004 CDD:395048 18/21 (86%)
C2H2 Zn finger 984..1004 CDD:275368 16/19 (84%)
zf-H2C2_2 996..1020 CDD:463886 21/23 (91%)
SUF4-like 1012..>1067 CDD:411020 46/54 (85%)
C2H2 Zn finger 1012..1038 CDD:411020 24/25 (96%)
C2H2 Zn finger 1012..1033 CDD:275368 19/20 (95%)
C2H2 Zn finger 1041..1062 CDD:411020 17/20 (85%)
C2H2 Zn finger 1041..1061 CDD:275368 16/19 (84%)
Blue background indicates that the domain is not in the aligned region.

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