DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GCS2beta and PSL4

DIOPT Version :10

Sequence 1:NP_609844.1 Gene:GCS2beta / 35056 FlyBaseID:FBgn0032643 Length:548 Species:Drosophila melanogaster
Sequence 2:NP_568840.3 Gene:PSL4 / 835736 AraportID:AT5G56360 Length:647 Species:Arabidopsis thaliana


Alignment Length:126 Identity:28/126 - (22%)
Similarity:44/126 - (34%) Gaps:41/126 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   151 KRFSCPYC----AVTMTFK------SNLNIHIKTV-----------HLKEISKSCELCGQGFVNY 194
            ::.:.||.    |||...|      |..|:.|.::           .|...||:.|...||.:: 
plant   157 QKHAIPYVATKGAVTAMTKAMAVDESRHNVRINSISPGNIWTPLWEELSSHSKNSEAMIQGGID- 220

  Fly   195 NSYKNHMASQHGTGEYSCETCAKRFTHLRTYNMHVRRHHKADATYKKKKQLCGTCGAMVTH 255
                ..:..:.||    .|.|||...:|           .|:.|:.....|..|.||.:.:
plant   221 ----AQLLGRMGT----AEECAKAALYL-----------AAEGTFCTGIDLLLTGGAELNY 262

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GCS2betaNP_609844.1 PRKCSH-like 26..193 CDD:372423 15/62 (24%)
SMC_prok_B <154..428 CDD:274008 28/123 (23%)
PRKCSH 398..547 CDD:414904
PSL4NP_568840.3 PRKCSH-like 35..182 CDD:372423 6/24 (25%)
MSCRAMM_ClfA <231..446 CDD:468110 11/43 (26%)
PRKCSH 489..627 CDD:414904
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.