Protein Alignment ChLD3 and verm

DIOPT Version :10

• Sequence 1: NP_609806.1
• Gene: ChLD3 / 35002
• FlyBaseID: FBgn0032598
• Length: 577
• Species: Drosophila melanogaster
• Sequence 2: NP_001163469.1
• Gene: verm / 40149
• FlyBaseID: FBgn0261341
• Length: 555
• Species: Drosophila melanogaster
• Alignment Length: 565
• Identity: 238/565 - (42%)
• Similarity: 329/565 - (58%)
• Gaps: 57/565 - (10%)

  Fly    49 WMMVALMIMSSSLDALVIDNDGIVGNQTRHRRSTSGAASCMQDARFYRNP--------------- 98
            |.:::::.:..::|.|.:.|            |...|.......|:.|.|
  Fly     5 WPILSVVCLCLAVDGLYVKN------------SFEPAIDQDPSRRYQRKPHGQDKLEGVDVEEVC 57

  Fly    99 -NRPV---HKIWTNSECAKYFLC----LDG--EVFEFKCSEGLLFDVVRQICDFKANVDNCDVSA 153
             :||.   .::.|:.:|.:.:.|    .||  .:...:|:.||.|||:||:||:|:||.:|||..
  Fly    58 ADRPADEYFRLETDGDCREVYRCDSAGEDGTWRLAPIRCAGGLAFDVLRQLCDWKSNVKSCDVLE 122

  Fly   154 ETPAPKPLLEMAD-CADEYQLGCADGTCLPQEYFCDGSVDCPDGSDEGWCDVEHDPNAAGACDPR 217
            :....||:|:..: ...|.:|.|.||.||.:|.||:|..||.|.|||..|.|:.|||.|..|||.
  Fly   123 KPRKAKPILKTDEPICPEGKLSCGDGECLDKELFCNGKSDCKDESDENACSVDEDPNRAPECDPT 187

  Fly   218 KCHLPQCFCSKDGTQIPGSLPAQSVPQMILLTFDDAINHDNWELFSKVLFTQHRRNPNGCPIKGT 282
            :|.||.||||.|||:|||.:..|.|||||.:||:.|:|.||.:|:..: |...|:|||||.||||
  Fly   188 QCALPDCFCSADGTRIPGGIEPQQVPQMITITFNGAVNVDNIDLYEDI-FNGQRQNPNGCSIKGT 251

  Fly   283 FYVSHPFTNYQYVQKLWNDGHEIAVHSVTHRGPEMWWSKNATIEDWFDEMVGQANIINKFAAVRM 347
            |:|||.:|||..||.|...||||:|.|:||:....:|: ..:.:||..||.|...|:.:||.:..
  Fly   252 FFVSHKYTNYSAVQDLHRRGHEISVFSLTHKDDPNYWT-GGSYDDWLAEMAGSRLIVERFANITD 315

  Fly   348 EEIRGMRVPFLRVGWNRQFLMMKEFGFVYDSSMVAPHSNPPLWPYTLDYKMPHSCTGVNQNCPSR 412
            ..|.|||.|:||||.|:||.||.:..||||:|:.|.....|:|||||.::|||.|.|...|||||
  Fly   316 GSIIGMRAPYLRVGGNKQFEMMADQFFVYDASITASLGRVPIWPYTLYFRMPHKCNGNAHNCPSR 380

  Fly   413 SYPGIWELVMNQLE------VGEYM--CGMVDTCPPHLSGEDVYRMLTHNFKRHYLSNRAPFGLY 469
            |:| :||:|||:|:      ..|.:  |.|||:|....||:...|:|.|||.|||.|||||.||:
  Fly   381 SHP-VWEMVMNELDRRDDPTFDESLPGCHMVDSCSNVASGDQFARLLRHNFNRHYNSNRAPLGLH 444

  Fly   470 FHSTWFK-KVDYLNAFLKFLDDLQKLPDVFFVTNQQAIQWMRHPTPSNQLHQFESW--HCQPKDL 531
            ||::|.| |.:|.:..:||::::....|||||||.|.||||::||..|.|..|:.|  .|..|.
  Fly   445 FHASWLKSKKEYRDELIKFIEEMLGRNDVFFVTNLQVIQWMQNPTELNSLRDFQEWKEKCDVKG- 508

  Fly   532 DPHEQVCNTPNVCKVRSRVLQ-EDRFFYTCMECPAQYPWIRNEFG 575
               :..|:.||.|.:.:|.|. |....:||||||..||||.:..|
  Fly   509 ---QPYCSLPNACPLTTRELPGETLRLFTCMECPNNYPWILDPTG 550

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ChLD3	NP_609806.1	CBM_14	<111..149	CDD:426342	17/43 (40%)
		LDLa	168..202	CDD:238060	17/33 (52%)
		CE4_CDA_like_1	243..512	CDD:200596	136/277 (49%)
verm	NP_001163469.1	CBM_14	57..118	CDD:426342	20/60 (33%)
		LDLa	138..172	CDD:238060	17/33 (52%)
		CE4_CDA_like_1	213..488	CDD:200596	136/277 (49%)