DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5888 and LRRC52

DIOPT Version :10

Sequence 1:NP_609794.1 Gene:CG5888 / 34980 FlyBaseID:FBgn0028523 Length:455 Species:Drosophila melanogaster
Sequence 2:NP_001005214.2 Gene:LRRC52 / 440699 HGNCID:32156 Length:313 Species:Homo sapiens


Alignment Length:421 Identity:80/421 - (19%)
Similarity:146/421 - (34%) Gaps:143/421 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 KEPNLCECQEQEIKCENLQLHSDNLQLYGISCSIFDARGF------GYIPPLKVGNIGSLIVQNC 95
            |.||.|.||.||:.|...||..     |.:...:...|.|      ..:|.:.:|.:..|:..:|
Human    25 KCPNNCLCQAQEVICTGKQLTE-----YPLDIPLNTRRLFLNENRITSLPAMHLGLLSDLVYLDC 84

  Fly    96 AIPNAESIKYLLSKLGVSNYTELEIFNYFDPKKTDRGEVLQQHYTDHESLKKVSIIGFKSTLPEN 160
            .......         |.:||.:.:|...              |.|..|....||..|..::..|
Human    85 QNNRIRE---------VMDYTFIGVFKLI--------------YLDLSSNNLTSISPFTFSVLSN 126

  Fly   161 FLENLPALQQLSLKGSSDLPGNILHPLKNLTHLEIVVKNLGKVSGAIFAKQSKLKHLMIDCDAKN 225
                   |.||:              :.|..||    .:|.|.:   ||..:.|::|    |.:|
Human   127 -------LVQLN--------------IANNPHL----LSLHKFT---FANTTSLRYL----DLRN 159

  Fly   226 SSVEMSAFGPQELWHMTELQSIELFNCGDNVPTELFWMSEQLAYIGIRSNISYLSKDFLKVQKKL 290
            :.::  ......|:|:|.|::  ||..|:.      |          :.|.|:|  ||...   |
Human   160 TGLQ--TLDSAALYHLTTLET--LFLSGNP------W----------KCNCSFL--DFAIF---L 199

  Fly   291 LTLRLERNNIARLPDQLFRNTPLILEIHLAFNNLDRIQSGLFDKLKNLQVLNLEHNPITTIALNA 355
            :...::.:      |.|  |...:....|....:.|:.    :.|:.:.:.:|:|.....:.|..
Human   200 IVFHMDPS------DDL--NATCVEPTELTGWPITRVG----NPLRYMCITHLDHKDYIFLLLIG 252

  Fly   356 FTPIPTAHIYVGKLFKAAKNADWARSTNATICEEEYIYGVC--IYCKRDEYLDHFADSENCNKPN 418
            |.           :|.|...|.|             :.|||  :|    :...|.:..|:.::..
Human   253 FC-----------IFAAGTVAAW-------------LTGVCAVLY----QNTRHKSSEEDEDEAG 289

  Fly   419 PKAKDVLAKKAYENQLKAMPTHSWKKAKEYP 449
            .:.:  ::::.::.|..::        :|:|
Human   290 TRVE--VSRRIFQTQTSSV--------QEFP 310

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5888NP_609794.1 LRR <160..>359 CDD:443914 39/198 (20%)
leucine-rich repeat 168..189 CDD:275380 3/20 (15%)
leucine-rich repeat 190..213 CDD:275380 6/22 (27%)
leucine-rich repeat 214..243 CDD:275380 6/28 (21%)
leucine-rich repeat 244..266 CDD:275380 5/21 (24%)
leucine-rich repeat 267..289 CDD:275380 5/21 (24%)
leucine-rich repeat 290..313 CDD:275380 4/22 (18%)
leucine-rich repeat 314..337 CDD:275380 3/22 (14%)
leucine-rich repeat 338..357 CDD:275380 3/18 (17%)
LRRC52NP_001005214.2 LRR <35..>185 CDD:443914 44/213 (21%)
leucine-rich repeat 35..54 CDD:275380 6/23 (26%)
LRR 1 54..75 3/20 (15%)
leucine-rich repeat 55..78 CDD:275380 4/22 (18%)
LRR 2 78..99 5/29 (17%)
leucine-rich repeat 79..102 CDD:275380 5/31 (16%)
LRR 3 102..123 6/34 (18%)
leucine-rich repeat 103..126 CDD:275380 6/36 (17%)
LRR 4 126..148 10/49 (20%)
leucine-rich repeat 127..151 CDD:275380 10/44 (23%)
LRR 5 151..172 5/26 (19%)
leucine-rich repeat 152..175 CDD:275380 6/28 (21%)

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