DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5888 and Lrrc55

DIOPT Version :8

Sequence 1:NP_001285981.1 Gene:CG5888 / 34980 FlyBaseID:FBgn0028523 Length:455 Species:Drosophila melanogaster
Sequence 2:NP_001116447.1 Gene:Lrrc55 / 311171 RGDID:1561726 Length:311 Species:Rattus norvegicus

Alignment Length:298 Identity:64/299 (21%)
Similarity:98/299 (33%) Gaps:122/299 (41%)


  Fly     4 LLLLLSLIAPSWQENATVINPSYVTKAGCEALVKEPNLCECQEQEIKCENLQLHSDNLQLYGISC 68
            |||:..|:|      |.|::    :.||...    |.||.|:.|.:.|.|.:|.|          
  Rat    31 LLLVFFLLA------AGVMH----SDAGASC----PVLCTCRNQVVDCSNQRLFS---------- 71

  Fly    69 SIFDARGFGYIP---PLKVGNIGSLIVQNCAIPNAESIKYLLSKLGVSNYTELEIFNYFDPKKTD 130
                      :|   |:...|:.....:..|:|..    ||      :.|.||.:.:        
  Rat    72 ----------VPPDLPMDTRNLSLAHNRIAAVPPG----YL------TCYMELRVLD-------- 108

  Fly   131 RGEVLQQHYTDHESLKKVSIIGFKSTLPENFLENLPALQQLSLKGSSDLPGNILHPLKNLTHLEI 195
                                      |..|.|..||             ||..|| .|.|.||::
  Rat   109 --------------------------LRNNSLMELP-------------PGLFLH-AKRLAHLDL 133

  Fly   196 VVKNLGKVSGAIFAKQSKLKHLMIDCDAKNSSVEMSAFGPQELWHMTELQSIELFNCGDNVPTEL 260
            ...||..|...:|.:...|.|:.:..:.....|...||  |.|.|:.:|                
  Rat   134 SYNNLSHVPADMFREAHGLVHIDLSHNPWLRRVHPQAF--QGLVHLRDL---------------- 180

  Fly   261 FWMSEQLAYIGIRSNISYLSKDFLKVQKKLLTLRLERN 298
                 .|:|.|    :::||.:.|:....|:||::..|
  Rat   181 -----DLSYGG----LAFLSLEALEGLPGLVTLQIGGN 209

Known Domains:


GeneSequenceDomainRegion External IDIdentity
CG5888NP_001285981.1 leucine-rich repeat 168..189 CDD:275380 5/21 (24%)
leucine-rich repeat 190..213 CDD:275380 7/23 (30%)
leucine-rich repeat 214..243 CDD:275380 8/29 (28%)
leucine-rich repeat 244..266 CDD:275380 1/22 (5%)
leucine-rich repeat 267..289 CDD:275380 6/22 (27%)
LRR_8 288..348 CDD:290566 4/12 (33%)
leucine-rich repeat 290..313 CDD:275380 4/10 (40%)
leucine-rich repeat 314..337 CDD:275380
leucine-rich repeat 338..357 CDD:275380
Lrrc55NP_001116447.1 LRRNT 51..82 CDD:214470 11/55 (20%)
leucine-rich repeat 60..79 CDD:275380 7/39 (18%)
LRR_RI <72..205 CDD:238064 45/218 (21%)
leucine-rich repeat 80..103 CDD:275380 6/33 (18%)
LRR_8 103..161 CDD:290566 21/106 (20%)
LRR_4 104..143 CDD:289563 17/87 (20%)
leucine-rich repeat 104..127 CDD:275380 11/71 (15%)
leucine-rich repeat 128..151 CDD:275380 7/23 (30%)
LRR_8 151..210 CDD:290566 19/87 (22%)
leucine-rich repeat 152..176 CDD:275380 7/26 (27%)
leucine-rich repeat 177..200 CDD:275380 7/48 (15%)
TPKR_C2 209..260 CDD:301599 1/2 (50%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 O PTHR46473
Phylome 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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