Protein Alignment CG5888 and Lrrc55

DIOPT Version :9

• Sequence 1: NP_001285981.1
• Gene: CG5888 / 34980
• FlyBaseID: FBgn0028523
• Length: 455
• Species: Drosophila melanogaster
• Sequence 2: NP_001381943.1
• Gene: Lrrc55 / 311171
• RGDID: 1561726
• Length: 311
• Species: Rattus norvegicus
• Alignment Length: 298
• Identity: 64/298 - (21%)
• Similarity: 98/298 - (32%)
• Gaps: 122/298 - (40%)

  Fly     4 LLLLLSLIAPSWQENATVINPSYVTKAGCEALVKEPNLCECQEQEIKCENLQLHSDNLQLYGISC 68
            |||:..|:|      |.|::    :.||...    |.||.|:.|.:.|.|.:|.|
  Rat    31 LLLVFFLLA------AGVMH----SDAGASC----PVLCTCRNQVVDCSNQRLFS---------- 71

  Fly    69 SIFDARGFGYIP---PLKVGNIGSLIVQNCAIPNAESIKYLLSKLGVSNYTELEIFNYFDPKKTD 130
                      :|   |:...|:.....:..|:|..    ||      :.|.||.:.:
  Rat    72 ----------VPPDLPMDTRNLSLAHNRIAAVPPG----YL------TCYMELRVLD-------- 108

  Fly   131 RGEVLQQHYTDHESLKKVSIIGFKSTLPENFLENLPALQQLSLKGSSDLPGNILHPLKNLTHLEI 195
                                      |..|.|..||             ||..|| .|.|.||::
  Rat   109 --------------------------LRNNSLMELP-------------PGLFLH-AKRLAHLDL 133

  Fly   196 VVKNLGKVSGAIFAKQSKLKHLMIDCDAKNSSVEMSAFGPQELWHMTELQSIELFNCGDNVPTEL 260
            ...||..|...:|.:...|.|:.:..:.....|...||  |.|.|:.:|
  Rat   134 SYNNLSHVPADMFREAHGLVHIDLSHNPWLRRVHPQAF--QGLVHLRDL---------------- 180

  Fly   261 FWMSEQLAYIGIRSNISYLSKDFLKVQKKLLTLRLERN 298
                 .|:|.|    :::||.:.|:....|:||::..|
  Rat   181 -----DLSYGG----LAFLSLEALEGLPGLVTLQIGGN 209

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG5888	NP_001285981.1	leucine-rich repeat	168..189	CDD:275380	4/20 (20%)
		leucine-rich repeat	190..213	CDD:275380	7/22 (32%)
		leucine-rich repeat	214..243	CDD:275380	8/28 (29%)
		leucine-rich repeat	244..266	CDD:275380	1/21 (5%)
		leucine-rich repeat	267..289	CDD:275380	6/21 (29%)
		LRR_8	288..348	CDD:290566	4/11 (36%)
		leucine-rich repeat	290..313	CDD:275380	4/9 (44%)
		leucine-rich repeat	314..337	CDD:275380
		leucine-rich repeat	338..357	CDD:275380
Lrrc55	NP_001381943.1	None

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR46473
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	1.100