DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5888 and Lrrc52

DIOPT Version :10

Sequence 1:NP_609794.1 Gene:CG5888 / 34980 FlyBaseID:FBgn0028523 Length:455 Species:Drosophila melanogaster
Sequence 2:NP_001070902.1 Gene:Lrrc52 / 289199 RGDID:1312014 Length:314 Species:Rattus norvegicus


Alignment Length:232 Identity:52/232 - (22%)
Similarity:82/232 - (35%) Gaps:82/232 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 KEPNLCECQEQEIKCENLQLHS-------DNLQLYGISCSIFDARGFGYIPPLKVGNIGSLIVQN 94
            |.||.|.||:||:.|.:|||..       :..:||      .:......:|.|::|.:..|:..:
  Rat    25 KCPNNCLCQDQEVACTDLQLTEYPTDIPLNTRRLY------LNNNKITSLPALQLGFLSDLVYLD 83

  Fly    95 CAIPNAESIKYLLSKLGVSNYTELEIFNYFDPKKTDRGEVLQQHYTDHESLKKVSIIGFKSTLPE 159
            |.......         |.:||.:.||...              |.|..|....||..|..::  
  Rat    84 CQNNRIRE---------VMDYTFIGIFKLL--------------YLDLSSNNLTSISPFSFSI-- 123

  Fly   160 NFLENLPALQQLSLKGSSDLPGNILHPLKNLTHLEIVVKNLGKVSGAIFAKQSKLKHLMIDCDAK 224
              |.||..|.                 :.|..||..:.|       .|||..:.|::|    |.:
  Rat   124 --LTNLVRLN-----------------ISNNPHLLYLDK-------YIFANTTSLRYL----DLR 158

  Fly   225 NSSVEM---SAFGPQELWHMTELQSIEL------FNC 252
            |:.:::   :.|     .|:..||::.|      .||
  Rat   159 NTGMQIIDHTGF-----HHLVVLQTLYLSGNPWKCNC 190

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5888NP_609794.1 LRR <160..>359 CDD:443914 22/102 (22%)
leucine-rich repeat 168..189 CDD:275380 1/20 (5%)
leucine-rich repeat 190..213 CDD:275380 6/22 (27%)
leucine-rich repeat 214..243 CDD:275380 6/31 (19%)
leucine-rich repeat 244..266 CDD:275380 5/15 (33%)
leucine-rich repeat 267..289 CDD:275380
leucine-rich repeat 290..313 CDD:275380
leucine-rich repeat 314..337 CDD:275380
leucine-rich repeat 338..357 CDD:275380
Lrrc52NP_001070902.1 LRRNT 26..55 CDD:214470 11/28 (39%)
leucine-rich repeat 35..54 CDD:275380 6/18 (33%)
LRR <43..>184 CDD:443914 40/206 (19%)
leucine-rich repeat 56..78 CDD:275380 5/27 (19%)
leucine-rich repeat 79..102 CDD:275380 6/31 (19%)
leucine-rich repeat 103..126 CDD:275380 7/40 (18%)
leucine-rich repeat 127..151 CDD:275380 9/47 (19%)
leucine-rich repeat 152..175 CDD:275380 6/31 (19%)
LRRCT 184..>222 CDD:214507 2/7 (29%)
Blue background indicates that the domain is not in the aligned region.

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