DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3793 and LCMT1

DIOPT Version :9

Sequence 1:NP_001246038.1 Gene:CG3793 / 34928 FlyBaseID:FBgn0028507 Length:341 Species:Drosophila melanogaster
Sequence 2:XP_011544166.1 Gene:LCMT1 / 51451 HGNCID:17557 Length:357 Species:Homo sapiens


Alignment Length:288 Identity:141/288 - (48%)
Similarity:192/288 - (66%) Gaps:5/288 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 KRCAVRLGYWKDDYIGYFVR-NQERKAPEINRGYFARVKGVEMCVEKFLKKTSGNCQIINLGCGF 97
            :|.||.:|||.|.||.:||| ::|||||||||||||||.||...::.||:||..:|||:|||.|.
Human    60 RRFAVSIGYWHDPYIQHFVRLSKERKAPEINRGYFARVHGVSQLIKAFLRKTECHCQIVNLGAGM 124

  Fly    98 DTLYFRLRDTAHQVKNFIELDFPTVTARKCYTIKRNKAL---LARIHDEDGEVRLSPTDLHGPSY 159
            ||.::||:|.......:.|:|||.:..||.::||....|   :..:|.|| .:::....|....|
Human   125 DTTFWRLKDEDLLPSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSED-TLQMDGHILDSKRY 188

  Fly   160 HLMGVDLRNLDEVDSKLQQAEVDYSLPTIFLAECVLVYIEAQNCRNLLKWIAQKFQAAVFVNYEQ 224
            .::|.|||:|.|::.||::..::..|||:.:|||||||:..:...|||||.|..|:.|:|:||||
Human   189 AVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQ 253

  Fly   225 VNMNDRFGDVMLNNLRGRGCSLAGVESCLSLDTQRNRFKDSGWTGARAWDMVQVYESISAAERQR 289
            |||.||||.:|:.|||.|.|.|||||:|.||::|:.|...:||..|.|.||:::|..:..||..|
Human   254 VNMGDRFGQIMIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDMMELYNRLPRAEVSR 318

  Fly   290 IERLEMLDEGELLLQLFQHYCLVVAWLG 317
            ||.||.|||.|||.||.:||||..|..|
Human   319 IESLEFLDEMELLEQLMRHYCLCWATKG 346

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3793NP_001246038.1 LCM 22..211 CDD:397957 82/180 (46%)
LCMT1XP_011544166.1 LCM 67..240 CDD:309269 79/173 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165150783
Domainoid 1 1.000 173 1.000 Domainoid score I3715
eggNOG 1 0.900 - - E1_KOG2918
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H41123
Inparanoid 1 1.050 295 1.000 Inparanoid score I2761
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53717
OrthoDB 1 1.010 - - D1094856at2759
OrthoFinder 1 1.000 - - FOG0001575
OrthoInspector 1 1.000 - - oto88330
orthoMCL 1 0.900 - - OOG6_100931
Panther 1 1.100 - - LDO PTHR13600
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2177
SonicParanoid 1 1.000 - - X3234
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1615.800

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