DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3793 and lcmt2

DIOPT Version :10

Sequence 1:NP_001246038.1 Gene:CG3793 / 34928 FlyBaseID:FBgn0028507 Length:341 Species:Drosophila melanogaster
Sequence 2:XP_031753467.1 Gene:lcmt2 / 100144923 XenbaseID:XB-GENE-5944136 Length:895 Species:Xenopus tropicalis


Alignment Length:302 Identity:107/302 - (35%)
Similarity:157/302 - (51%) Gaps:11/302 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 VIATNDDASDCKRCAVRLGYWKDDYIGYFVRNQERKAPEINRGYFARVKGVEMCVEKFLKKTSGN 87
            |.:|||.::..|..|..|||::|:|...||....|::|.|:|||..|.:.|..|:.:|::.|. :
 Frog   235 VQSTNDCSTLSKVSAASLGYFEDEYQKNFVNRNCRRSPLIHRGYCVRSQAVTHCINEFIRDTQ-S 298

  Fly    88 C---QIINLGCGFDTLYFRLRDTAHQVKNFIELDFPTVTARKCYTIKRN---KALLARIHDEDGE 146
            |   |:::||||||:|:||||..:.......|:|||:|..|||..|:::   :.||......||.
 Frog   299 CDHRQVVSLGCGFDSLFFRLRMQSESPLCVWEVDFPSVVKRKCLLIEQSGDLRDLLGSYVTPDGN 363

  Fly   147 VRLSPTDLHGPSYHLMGVDLRNLDEVDSKLQQAEVDYSLPTIFLAECVLVYIEAQNCRNLLKWIA 211
               .|..|....|.|:||||..:..:|:.|..|.:.:..||:.|.|..|.|::......|:.|.|
 Frog   364 ---GPLVLLSQGYKLLGVDLTEVSSLDAALNLAGLSWDCPTLVLGEVALCYMDPARSTALIGWAA 425

  Fly   212 QKFQAAVFVNYEQVNMNDRFGDVMLNNLRGRGCSLAGVESCLSLDTQRNRFKDSGWTGARAWDMV 276
            ::|:.:.||.|||...:|.||.||.::.......|..:.....:..|..||...||...||.||.
 Frog   426 ERFRDSRFVLYEQSCPSDPFGRVMTSHFASLNSPLLSLSEFPHIQDQEQRFLHKGWKTCRALDMN 490

  Fly   277 QVYES-ISAAERQRIERLEMLDEGELLLQLFQHYCLVVAWLG 317
            :...| :...|.|||..||..||.|.|.....||.::||..|
 Frog   491 EFCASCVPLPEVQRIHNLEPFDEFEELHLKCSHYFILVASQG 532

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3793NP_001246038.1 LCM 22..211 CDD:427692 69/193 (36%)
lcmt2XP_031753467.1 AdoMet_MTases 247..425 CDD:473071 64/181 (35%)
NanM <585..771 CDD:442289
KELCH repeat 685..736 CDD:276965
KELCH repeat 740..787 CDD:276965
Blue background indicates that the domain is not in the aligned region.

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