DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3793 and lcmt2

DIOPT Version :10

Sequence 1:NP_001246038.1 Gene:CG3793 / 34928 FlyBaseID:FBgn0028507 Length:341 Species:Drosophila melanogaster
Sequence 2:XP_073767535.1 Gene:lcmt2 / 100005300 ZFINID:ZDB-GENE-110714-2 Length:722 Species:Danio rerio


Alignment Length:305 Identity:110/305 - (36%)
Similarity:160/305 - (52%) Gaps:8/305 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 DEAVIATNDDASDCKRCAVRLGYWKDDYIGYFVRNQERKAPEINRGYFARVKGVEMCVEKFLKKT 84
            |.||..|||.:...|..|...||:.||::.:||....|:||.|||||:.|.|.|:.||::||..|
Zfish    61 DAAVQGTNDSSVVSKVSAAAQGYFHDDFLKHFVCKMSRRAPLINRGYYVRWKAVDHCVKQFLHAT 125

  Fly    85 SGNC---QIINLGCGFDTLYFRLR-DTAHQVKNFIELDFPTVTARKCYTIKRNKALLARIHDEDG 145
            . :|   ||::||.|||:|:|||| :.|.......|:|||.|..||...|..|..|...:.|.:.
Zfish   126 K-SCSRRQILSLGAGFDSLFFRLRAEGALGGVTVFEVDFPEVARRKAALINSNACLKDLLPDWET 189

  Fly   146 EV--RLSPTDLHGPSYHLMGVDLRNLDEVDSKLQQAEVDYSLPTIFLAECVLVYIEAQNCRNLLK 208
            .:  :.:...:....|:|:|.|:|...||::.|..|.:.:..||:.|:|.||.|:|.|....::.
Zfish   190 VLNKQTNAVFISSGHYNLIGADVRKEQEVEASLSAAGLQWDNPTLILSEVVLTYMETQWSDAVIG 254

  Fly   209 WIAQKFQAAVFVNYEQVNMNDRFGDVMLNNLRGRGCSLAGVESCLSLDTQRNRFKDSGWTGARAW 273
            |.|:....::||.|||::.:|.||.||.::.......:..::.......|..||...||......
Zfish   255 WAARLLPQSMFVMYEQIHPDDPFGRVMQSHFLKLNSKIHSLQQYPDNVAQTQRFIQEGWEKCHCL 319

  Fly   274 DMVQVY-ESISAAERQRIERLEMLDEGELLLQLFQHYCLVVAWLG 317
            ||.|.| :.:...||||||.||..||.|...|...||.::.|..|
Zfish   320 DMNQFYFDLLPEDERQRIENLEPFDEFEEWHQKCSHYFILTASKG 364

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3793NP_001246038.1 LCM 22..211 CDD:427692 73/194 (38%)
lcmt2XP_073767535.1 None

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