DRSC/TRiP Functional Genomics Resources

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Protein Alignment nht and taf4

DIOPT Version :10

Sequence 1:NP_523574.4 Gene:nht / 34902 FlyBaseID:FBgn0041103 Length:245 Species:Drosophila melanogaster
Sequence 2:NP_001072285.1 Gene:taf4 / 779738 XenbaseID:XB-GENE-488490 Length:1033 Species:Xenopus tropicalis


Alignment Length:312 Identity:64/312 - (20%)
Similarity:112/312 - (35%) Gaps:86/312 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 PIQ-------PYAGQLLIINDLILPDSGSQDASKAKVSIKKNQRASFFDRSSIYKKIMKHLSQGN 66
            |:|       |.|.|.|:.....:....:|.|:..|..:|:....||.|...|        :...
 Frog   730 PLQTGAMQTVPMAKQALVQGAKTMSAISAQAAAAQKNKLKEPGGGSFRDDDDI--------NDVA 786

  Fly    67 QADDINISEQE----------------------WLLDSFL--AALETYMKH----VVKKTIELCE 103
            ....:|:||:.                      :||.:.|  ..||...||    :.:..:....
 Frog   787 SMAGVNLSEESARILATNSELVGTLTRSCKDETFLLPALLQRRILEIGKKHGITEIHQDVVSYVS 851

  Fly   104 HRTSYHLHN------------------DERCVMKNDMRVTMMFLNDLEIADYGSSDDETG--FYR 148
            |.|...|.|                  |:|....:|:|..:.|...|:..:....|::..  ..|
 Frog   852 HATQQRLQNIVEKISETAQQKNISHKDDDRYEQTSDVRTQLKFFEQLDQIEKQRKDEQEREILMR 916

  Fly   149 KRRAENIDEERKVARLE-----------------SVNDTALLAISGRKR-----PGEQLAPESAP 191
            ..::.:..|:.:..||:                 ..|.|||.||..||:     ||.....||:.
 Frog   917 AAKSRSRQEDPEQLRLKQKAKEMQQQELAQMRQRDANLTALAAIGPRKKRKVESPGPGSGSESSS 981

  Fly   192 SGSKVAKLT-GAPIQRACAPRFKHMNIRDVLQFMEEDRRYARSNMLFEAYLK 242
            :.:..|..: |...::....|...:|:||::..:|.:|..:.|.:|::|:||
 Frog   982 TSTATASSSAGGGSRQFTRQRITRVNLRDLILCLESERETSHSLLLYKAFLK 1033

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nhtNP_523574.4 TAF4 <85..237 CDD:461598 40/198 (20%)
taf4NP_001072285.1 PHA03247 <323..496 CDD:223021
TAFH 541..619 CDD:462195
TAF4 782..1030 CDD:461598 48/255 (19%)
Blue background indicates that the domain is not in the aligned region.

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