DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4168 and Tril

DIOPT Version :10

Sequence 1:NP_609740.4 Gene:CG4168 / 34889 FlyBaseID:FBgn0028888 Length:1330 Species:Drosophila melanogaster
Sequence 2:NP_001029182.1 Gene:Tril / 362364 RGDID:1310827 Length:811 Species:Rattus norvegicus


Alignment Length:821 Identity:196/821 - (23%)
Similarity:294/821 - (35%) Gaps:206/821 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   500 GIFAVDSWGS-----NLQTILLRNNKITHLHLGSFAGLEQIQEISLSFNDITIHHPLVFENVSRT 559
            |:.||....|     ::.|..|..|.||::....|..|.|::.:.|.:|.|...||..||.:|| 
  Rat    45 GLRAVPKTSSLPSPQDVLTYSLGGNFITNITAFDFHRLGQLRRLDLQYNQIRSLHPKTFEKLSR- 108

  Fly   560 LKILELSFAVFPARSLESLDPLDALLPLSQLIWLGLDNNNLKQVSNESFAQMRELSYINLSFNQL 624
                           ||.|             :||  ||.|:.::..:.|.:|:|..:..:.|::
  Rat   109 ---------------LEEL-------------YLG--NNLLQALAPGTLAPLRKLRILYANGNEI 143

  Fly   625 KTLPRGLFQSDAHSHLVEIDLSYNGLERLEAQTFHSLGDLQTLNLQSNRLRTIARHAFHNLEFLR 689
            ..|.||.|  :....||::.|..|.|..|....|..||:|..|:|::||:|.:.::||..|..||
  Rat   144 GRLSRGSF--EGLESLVKLRLDGNVLGALPDAVFAPLGNLLYLHLEANRIRFLGKNAFTQLGKLR 206

  Fly   690 YLDLSYNRL-VNISHGA-FTVLPNLAALDLMHNQLCSLSLKSFLYVSNTTTPLRLNVSHNHIASF 752
            :|:||.|.| .::.|.| |..|.:|:.|.|..|.|..|..:.|                      
  Rat   207 FLNLSANELQPSLRHAATFVPLRSLSTLILSANSLQHLGPRVF---------------------- 249

  Fly   753 YDELSSYMYIYQLDISHNHVTKSDSFTNLANTLRFLNLAHNQLGSLQSHAFGDLEFLEILNVAHN 817
                             .|:.:          |..|:|:.|||..|...||..||.|..|.:..|
  Rat   250 -----------------QHLPR----------LGLLSLSGNQLTHLAPEAFWGLEALRELRLEGN 287

  Fly   818 NLTSLRRRSFQGLNSLQELDLSHNQLDQLQVEQFSNLRKLRILRINSNRLRALPREVF-MNTRLE 881
            .|..|.....:.|:||:.||||.|:|..|....|.:..:||.|.:..|.|.||..::| .:..|.
  Rat   288 RLNQLPLTLLEPLHSLEALDLSGNELSALHPATFGHQGRLRELSLRDNALSALSGDIFAASPALY 352

  Fly   882 FLDIAENQLSVWPVPAFTDIGFT----LRSIQMSHNNLEYLDASMFINSQFLYDISLARNRITIL 942
            .||:..|             |:|    ||.::....|.......:.:..|..:..:|....:..|
  Rat   353 RLDLDGN-------------GWTCDCRLRGLKRWMGNWHSQGRLLTVFVQCRHPPALRGKYLDYL 404

  Fly   943 PDNTFSFLNNLTNLDLSQNPLVTTNLREVFVHTPRLRKLSLHHMGLYVLPPL----KLPLLSYLD 1003
            .|   ..|.|.:.:|.|.:|  |...|:..:.|.         .|..:.||.    :|||.....
  Rat   405 DD---QLLQNGSCVDPSPSP--TAGSRQWPISTA---------PGEGMTPPAGLAQELPLQPQPQ 455

  Fly  1004 VS--GNYLQELSPLGSLRHLRHVNVSHNKLTNASCAAEHLPPSV--------RVLDLAHNPLR-R 1057
            ..  |..|..::..|:.:.|.. |.|..:|.......:|..||.        :.|||...|.| |
  Rat   456 PQQRGRLLPGVAWAGAAKELVG-NRSALRLNRRGPGLQHQSPSAAAASGSAPQSLDLHEKPERGR 519

  Fly  1058 ITLHDLASLRHLAELNILDVKVTNPQAFSKLRSLRKLHASSHANLGEIVARIPGLQQLRVHCLEP 1122
            .|..:|..              |.|...|:..|.......|.....:  .|:...||.|....:.
  Rat   520 PTRANLPQ--------------TEPTPTSEPASGTPSARDSWQRAAK--QRLASEQQGRAVQYDS 568

  Fly  1123 NIG-QQLFAKLANNTKIRLLELYGSNVQTIAPDVFTGL--SRSQRLQ----VKISHTRISDLPPG 1180
            .:| ..|.:...:..|..|..|....|...:..|...:  .||.|.|    .::...|....|. 
  Rat   569 GVGLPPLVSDPCDFNKFILCNLTVEAVSANSASVRWAVREHRSPRPQGGARFRLLFDRFGQQPK- 632

  Fly  1181 IFYALREVPHLSIDISHNRINALAADSFYPNKSYWDAVGTRSIMGGLITSHNPLECECGLV---- 1241
             |.....:|..|...:   ::.|..|:.|       .|....::||.:....|.:...|||    
  Rat   633 -FQRFVYLPERSDSAT---LHELRGDTPY-------LVCVEGVLGGRVCPVAPRDHCAGLVTLPE 686

  Fly  1242 ------------------------------WFGHWLRRWLR 1252
                                          |...||||.||
  Rat   687 AGGRGGVDYQLLTLVLLAINALLVLLALAAWGSRWLRRKLR 727

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4168NP_609740.4 PRK15370 <69..>353 CDD:185268
leucine-rich repeat 99..118 CDD:275380
leucine-rich repeat 122..146 CDD:275380
leucine-rich repeat 147..170 CDD:275380
leucine-rich repeat 171..194 CDD:275380
leucine-rich repeat 195..214 CDD:275380
leucine-rich repeat 215..236 CDD:275380
leucine-rich repeat 266..287 CDD:275380
leucine-rich repeat 288..311 CDD:275380
leucine-rich repeat 312..338 CDD:275380
LRR <338..651 CDD:443914 41/155 (26%)
leucine-rich repeat 339..365 CDD:275380
leucine-rich repeat 366..388 CDD:275380
leucine-rich repeat 389..412 CDD:275380
leucine-rich repeat 414..436 CDD:275380
leucine-rich repeat 437..459 CDD:275380
leucine-rich repeat 460..483 CDD:275380
leucine-rich repeat 484..510 CDD:275380 4/14 (29%)
leucine-rich repeat 511..534 CDD:275380 7/22 (32%)
leucine-rich repeat 535..589 CDD:275380 12/53 (23%)
LRR 543..971 CDD:443914 116/434 (27%)
leucine-rich repeat 590..613 CDD:275380 6/22 (27%)
leucine-rich repeat 614..639 CDD:275380 6/24 (25%)
leucine-rich repeat 640..663 CDD:275380 8/22 (36%)
leucine-rich repeat 664..687 CDD:275380 9/22 (41%)
leucine-rich repeat 688..711 CDD:275380 11/24 (46%)
leucine-rich repeat 712..735 CDD:275380 7/22 (32%)
leucine-rich repeat 740..783 CDD:275380 1/42 (2%)
leucine-rich repeat 785..808 CDD:275380 10/22 (45%)
leucine-rich repeat 809..832 CDD:275380 6/22 (27%)
leucine-rich repeat 833..856 CDD:275380 9/22 (41%)
leucine-rich repeat 857..879 CDD:275380 8/22 (36%)
leucine-rich repeat 880..900 CDD:275380 4/19 (21%)
leucine-rich repeat 905..928 CDD:275380 3/22 (14%)
LRR 911..>1203 CDD:443914 62/313 (20%)
leucine-rich repeat 929..952 CDD:275380 4/22 (18%)
leucine-rich repeat 953..977 CDD:275380 6/23 (26%)
leucine-rich repeat 978..1020 CDD:275380 9/47 (19%)
leucine-rich repeat 1045..1068 CDD:275380 8/31 (26%)
leucine-rich repeat 1069..1090 CDD:275380 3/20 (15%)
leucine-rich repeat 1091..1114 CDD:275380 2/22 (9%)
leucine-rich repeat 1115..1161 CDD:275380 8/48 (17%)
leucine-rich repeat 1162..1190 CDD:275380 6/31 (19%)
PCC 1230..>1298 CDD:188093 11/57 (19%)
TrilNP_001029182.1 LRRNT 27..56 CDD:214470 4/10 (40%)
leucine-rich repeat 37..57 CDD:275378 4/11 (36%)
LRR 1 61..81 6/19 (32%)
LRR_8 65..119 CDD:404697 23/84 (27%)
LRR 2 84..105 7/20 (35%)
leucine-rich repeat 85..108 CDD:275380 7/22 (32%)
LRR 104..>359 CDD:443914 94/336 (28%)
LRR 3 108..129 9/51 (18%)
leucine-rich repeat 109..132 CDD:275380 9/37 (24%)
LRR 4 132..153 6/22 (27%)
leucine-rich repeat 133..156 CDD:275380 6/24 (25%)
LRR 5 156..177 7/20 (35%)
leucine-rich repeat 157..180 CDD:275380 8/22 (36%)
LRR 6 180..201 8/20 (40%)
leucine-rich repeat 181..204 CDD:275380 9/22 (41%)
LRR 7 204..223 8/18 (44%)
leucine-rich repeat 205..230 CDD:275380 11/24 (46%)
LRR 8 230..251 7/59 (12%)
leucine-rich repeat 231..254 CDD:275380 8/61 (13%)
LRR 9 254..275 9/30 (30%)
leucine-rich repeat 255..278 CDD:275380 10/22 (45%)
LRR 10 278..298 5/19 (26%)
leucine-rich repeat 279..302 CDD:275380 6/22 (27%)
LRR 11 302..323 10/20 (50%)
leucine-rich repeat 303..323 CDD:275380 9/19 (47%)
LRR 12 326..347 8/20 (40%)
leucine-rich repeat 327..340 CDD:275378 5/12 (42%)
PCC 332..>441 CDD:188093 27/135 (20%)
leucine-rich repeat 351..363 CDD:275378 5/24 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 414..460 12/56 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 486..562 19/91 (21%)
FN3 589..667 CDD:473895 16/89 (18%)
Blue background indicates that the domain is not in the aligned region.

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