Protein Alignment CG4168 and rdo

DIOPT Version :10

• Sequence 1: NP_609740.4
• Gene: CG4168 / 34889
• FlyBaseID: FBgn0028888
• Length: 1330
• Species: Drosophila melanogaster
• Sequence 2: NP_001286024.1
• Gene: rdo / 35077
• FlyBaseID: FBgn0243486
• Length: 757
• Species: Drosophila melanogaster
• Alignment Length: 578
• Identity: 136/578 - (23%)
• Similarity: 236/578 - (40%)
• Gaps: 145/578 - (25%)

  Fly   664 LQTLNLQSNRLRTIARHAFHNLEFLRYLDLSYNRLVNISHGAFTVLPNLAALDLMHNQLCSLSLK 728
            |:.|.:..:.|..|...:|..|::||.||||.|.:.||:...|....||..|||..|::..::..
  Fly    84 LEILRITDSNLPAIGAESFWGLKYLRILDLSKNNITNITENNFRGQDNLLELDLSKNKVLRMASS 148

  Fly   729 SFLYVSNTTTPLRLNVSHNHIASFYDELSSYMYIYQLDISHNHVTKSDSFTNLANTLRFLNLAHN 793
            :|.::::..   |||::.|.|...              :..|..        :.:.|::|:|:.|
  Fly   149 TFRHLTDLR---RLNLADNSIVEL--------------VQRNFF--------MLSRLKYLDLSGN 188

  Fly   794 QLGSLQSHAFGDLEFLEILNVAHNNLTSLRRRSFQGLNSLQELDLSHNQLDQLQVEQFSNLRKLR 858
            .|..||...|.|:..|::|...:..|..:..:.:..|..|.||||..|:...|..::|.::::|.
  Fly   189 PLQDLQPDVFRDVPELKVLKCRNCQLKKINPQMYNLLPLLSELDLGRNEFKFLDKDEFRDVKRLT 253

  Fly   859 ILRINSNRLRALPREVF-MNTRLEFLDIAENQLSVWPVPAFTDIGFTLRSIQMSHNNLEYLDASM 922
            .:.::.|:|..:..::| |...|..||::.|:|:..|..:|..:           .||.:||
  Fly   254 KVLLDGNQLSVVVDQLFRMQKSLNHLDLSYNRLAKVPNDSFLQL-----------TNLTFLD--- 304

  Fly   923 FINSQFLYDISLARNRITILPDNTFSFLNNLTNLDLSQNPLV-TTNLREVFVHTPRLRKLSLHHM 986
                       |:.|::..|...:...|:||..|::|.|.|: ...:||.|  .|.:....|...
  Fly   305 -----------LSYNKLVRLEPQSIRSLSNLLTLNISGNVLMDLREMRETF--EPLIYYFFLTCS 356

  Fly   987 GLYVLPPLKLPLLSYLDVSGNYLQELSPLGSLRHLRHVNVSHNKLTNASCAAEHLPPSVRVLDLA 1051
            .|:.   ..:|.|::|.::......:..|...:.||::|:|.|.|.|.         ::.|:|
  Fly   357 KLFF---QLIPQLTHLAIADMGTMPVGLLHPFKQLRYLNISGNSLNNT---------ALEVID-- 407

  Fly  1052 HNPLRRITLHDLASLRHLAELNILDVKVTNPQAFSKLRSLRKLHASSHANLGEIVARIPGLQQLR 1116
              |.|              ||..||:            |..:||..|.    :.|.||.|::.:|
  Fly   408 --PCR--------------ELEFLDL------------SRNQLHGISE----DTVLRIQGIRNVR 440

  Fly  1117 VH-----CLEPNIGQQLFAKLANNTKIRLLELYGSNVQTIAPDVFTGLSRSQRLQVKISHTRISD 1176
            :.     |.|.::|     ||.|..:                          :||.|.....|..
  Fly   441 LDNNPLICDECHMG-----KLINVVR--------------------------QLQWKWDTYPICF 474

  Fly  1177 LPPGIFYALREVPHLSIDISHNRINAL------AADSFYPNKSYWDAVGTRSIMGGLI 1228
            ||..:..|  |:.:|.|:..|..:..:      ||.:.| |......:.|.:|:||:|
  Fly   475 LPKSLRGA--EINNLDINGLHTCLTFITDEEQNAASTSY-NFLEHGGLNTLAILGGII 529

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG4168	NP_609740.4	PRK15370	<69..>353	CDD:185268
		leucine-rich repeat	99..118	CDD:275380
		leucine-rich repeat	122..146	CDD:275380
		leucine-rich repeat	147..170	CDD:275380
		leucine-rich repeat	171..194	CDD:275380
		leucine-rich repeat	195..214	CDD:275380
		leucine-rich repeat	215..236	CDD:275380
		leucine-rich repeat	266..287	CDD:275380
		leucine-rich repeat	288..311	CDD:275380
		leucine-rich repeat	312..338	CDD:275380
		LRR	<338..651	CDD:443914
		leucine-rich repeat	339..365	CDD:275380
		leucine-rich repeat	366..388	CDD:275380
		leucine-rich repeat	389..412	CDD:275380
		leucine-rich repeat	414..436	CDD:275380
		leucine-rich repeat	437..459	CDD:275380
		leucine-rich repeat	460..483	CDD:275380
		leucine-rich repeat	484..510	CDD:275380
		leucine-rich repeat	511..534	CDD:275380
		leucine-rich repeat	535..589	CDD:275380
		LRR	543..971	CDD:443914	77/308 (25%)
		leucine-rich repeat	590..613	CDD:275380
		leucine-rich repeat	614..639	CDD:275380
		leucine-rich repeat	640..663	CDD:275380
		leucine-rich repeat	664..687	CDD:275380	6/22 (27%)
		leucine-rich repeat	688..711	CDD:275380	10/22 (45%)
		leucine-rich repeat	712..735	CDD:275380	6/22 (27%)
		leucine-rich repeat	740..783	CDD:275380	6/42 (14%)
		leucine-rich repeat	785..808	CDD:275380	9/22 (41%)
		leucine-rich repeat	809..832	CDD:275380	4/22 (18%)
		leucine-rich repeat	833..856	CDD:275380	8/22 (36%)
		leucine-rich repeat	857..879	CDD:275380	5/22 (23%)
		leucine-rich repeat	880..900	CDD:275380	7/19 (37%)
		leucine-rich repeat	905..928	CDD:275380	4/22 (18%)
		LRR	911..>1203	CDD:443914	65/297 (22%)
		leucine-rich repeat	929..952	CDD:275380	4/22 (18%)
		leucine-rich repeat	953..977	CDD:275380	8/24 (33%)
		leucine-rich repeat	978..1020	CDD:275380	6/41 (15%)
		leucine-rich repeat	1045..1068	CDD:275380	4/22 (18%)
		leucine-rich repeat	1069..1090	CDD:275380	4/20 (20%)
		leucine-rich repeat	1091..1114	CDD:275380	7/22 (32%)
		leucine-rich repeat	1115..1161	CDD:275380	7/50 (14%)
		leucine-rich repeat	1162..1190	CDD:275380	8/27 (30%)
		PCC	1230..>1298	CDD:188093
rdo	NP_001286024.1	LRR	69..>446	CDD:443914	110/459 (24%)
		leucine-rich repeat	84..107	CDD:275380	6/22 (27%)
		leucine-rich repeat	108..131	CDD:275380	10/22 (45%)
		leucine-rich repeat	132..155	CDD:275380	6/22 (27%)
		leucine-rich repeat	156..179	CDD:275380	6/47 (13%)
		leucine-rich repeat	180..203	CDD:275380	9/22 (41%)
		leucine-rich repeat	204..251	CDD:275380	12/46 (26%)
		leucine-rich repeat	252..275	CDD:275380	5/22 (23%)
		leucine-rich repeat	276..299	CDD:275380	7/33 (21%)
		leucine-rich repeat	300..323	CDD:275380	7/36 (19%)
		leucine-rich repeat	388..411	CDD:275380	11/49 (22%)