DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4168 and Cpn2

DIOPT Version :10

Sequence 1:NP_609740.4 Gene:CG4168 / 34889 FlyBaseID:FBgn0028888 Length:1330 Species:Drosophila melanogaster
Sequence 2:NP_001100555.2 Gene:Cpn2 / 303861 RGDID:1305170 Length:565 Species:Rattus norvegicus


Alignment Length:491 Identity:116/491 - (23%)
Similarity:179/491 - (36%) Gaps:159/491 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   481 YTQLSYLNMGYNSITDIPEGIFAVDSWGSNLQTILLRNNKITHLHLGSFAGLEQIQEISLSFNDI 545
            :.:.|:..:|..:.:..|           ||..::..|.::.||...:|.||.:::::.::.:. 
  Rat    79 FVETSFTTVGTRAFSGSP-----------NLTKVVFLNTRVHHLEPDAFGGLPRLEDLEVTGSP- 131

  Fly   546 TIHHPLVFENVSRTLKILELSFAVFPARSLESLDPLDALLPLSQLIWLGLDNNNLKQVSNESFAQ 610
                   |.|:|..:                                               |:.
  Rat   132 -------FSNLSANI-----------------------------------------------FSN 142

  Fly   611 MRELSYINLSFNQLKTLPRGLFQSDAHSHLVEIDLSYNGLERLEAQTFHSLGDLQTLNLQSNRLR 675
            :..|..:.|.||:|..||..|                          ||.:..|::|.||.|:|:
  Rat   143 LSSLGKLTLDFNRLAALPEDL--------------------------FHHMDTLESLQLQGNQLQ 181

  Fly   676 TIARHAFHNLEFLRYLDLSYNRLVNISHGAFTVLPNLAALDLMHNQLCSL---------SLKSFL 731
            |:....|.:|.:||.|:|:.|.|..:..|.|..|.:|..|.|..|....|         ||:...
  Rat   182 TLPGRLFQSLRYLRTLNLAQNLLTQLPKGMFQSLSSLQILKLSDNMFARLPEGVLSNLGSLQELF 246

  Fly   732 YVSNTTTPLRLNVSHNHIASFYDELSSYMYIYQLDISHNHVTKSDSFTNLANTLRFLNLAHNQLG 796
            ..||..|                |||.:::.:.|                  :|..|.|.||.:.
  Rat   247 LDSNAIT----------------ELSPHLFSHLL------------------SLEKLWLQHNAIS 277

  Fly   797 SLQSHAFGDLEFLEILNVAHNNLTSLRRRSFQGLNSLQELDLSHNQLDQLQVEQFSNLRKLRILR 861
            .|...||..|..|..||:..|.|.:|....|.....|..|.||:|||:.:....|:|||||..|.
  Rat   278 LLPVSAFSSLRNLTFLNLKDNALRTLPAGLFTHNPGLLHLSLSYNQLETVPEGSFANLRKLASLT 342

  Fly   862 INSNRLRALPREVFMNTRLEFLDIAENQLSVWPVPAFTDIGFTLRSIQMSHNNLEYLDASMFINS 926
            ::.|.:..||..||.|  ||                      .|..:.:..|||..|..::|.|.
  Rat   343 LSHNAITHLPENVFRN--LE----------------------QLVKLSLDSNNLTVLHPTLFHNL 383

  Fly   927 QFLYDISLARNRITILPDNTFSFLNNLTNLDLSQNP 962
            ..|..:.|:||::|:||...|....:|.||.|..||
  Rat   384 SKLQLLDLSRNQLTMLPGGIFDTNYDLFNLALLGNP 419

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4168NP_609740.4 PRK15370 <69..>353 CDD:185268
leucine-rich repeat 99..118 CDD:275380
leucine-rich repeat 122..146 CDD:275380
leucine-rich repeat 147..170 CDD:275380
leucine-rich repeat 171..194 CDD:275380
leucine-rich repeat 195..214 CDD:275380
leucine-rich repeat 215..236 CDD:275380
leucine-rich repeat 266..287 CDD:275380
leucine-rich repeat 288..311 CDD:275380
leucine-rich repeat 312..338 CDD:275380
LRR <338..651 CDD:443914 23/169 (14%)
leucine-rich repeat 339..365 CDD:275380
leucine-rich repeat 366..388 CDD:275380
leucine-rich repeat 389..412 CDD:275380
leucine-rich repeat 414..436 CDD:275380
leucine-rich repeat 437..459 CDD:275380
leucine-rich repeat 460..483 CDD:275380 0/1 (0%)
leucine-rich repeat 484..510 CDD:275380 3/25 (12%)
leucine-rich repeat 511..534 CDD:275380 7/22 (32%)
leucine-rich repeat 535..589 CDD:275380 3/53 (6%)
LRR 543..971 CDD:443914 105/429 (24%)
leucine-rich repeat 590..613 CDD:275380 1/22 (5%)
leucine-rich repeat 614..639 CDD:275380 8/24 (33%)
leucine-rich repeat 640..663 CDD:275380 2/22 (9%)
leucine-rich repeat 664..687 CDD:275380 9/22 (41%)
leucine-rich repeat 688..711 CDD:275380 9/22 (41%)
leucine-rich repeat 712..735 CDD:275380 7/31 (23%)
leucine-rich repeat 740..783 CDD:275380 4/42 (10%)
leucine-rich repeat 785..808 CDD:275380 9/22 (41%)
leucine-rich repeat 809..832 CDD:275380 7/22 (32%)
leucine-rich repeat 833..856 CDD:275380 10/22 (45%)
leucine-rich repeat 857..879 CDD:275380 8/21 (38%)
leucine-rich repeat 880..900 CDD:275380 2/19 (11%)
leucine-rich repeat 905..928 CDD:275380 7/22 (32%)
LRR 911..>1203 CDD:443914 20/52 (38%)
leucine-rich repeat 929..952 CDD:275380 8/22 (36%)
leucine-rich repeat 953..977 CDD:275380 6/10 (60%)
leucine-rich repeat 978..1020 CDD:275380
leucine-rich repeat 1045..1068 CDD:275380
leucine-rich repeat 1069..1090 CDD:275380
leucine-rich repeat 1091..1114 CDD:275380
leucine-rich repeat 1115..1161 CDD:275380
leucine-rich repeat 1162..1190 CDD:275380
PCC 1230..>1298 CDD:188093
Cpn2NP_001100555.2 LRRNT 44..75 CDD:214470
leucine-rich repeat 77..97 CDD:275380 3/28 (11%)
LRR 118..418 CDD:443914 105/438 (24%)
leucine-rich repeat 122..145 CDD:275380 4/77 (5%)
leucine-rich repeat 146..169 CDD:275380 10/48 (21%)
leucine-rich repeat 170..193 CDD:275380 9/22 (41%)
leucine-rich repeat 194..217 CDD:275380 9/22 (41%)
leucine-rich repeat 218..241 CDD:275380 5/22 (23%)
leucine-rich repeat 242..265 CDD:275380 8/56 (14%)
leucine-rich repeat 266..289 CDD:275380 9/22 (41%)
leucine-rich repeat 290..313 CDD:275380 7/22 (32%)
leucine-rich repeat 314..337 CDD:275380 10/22 (45%)
leucine-rich repeat 338..361 CDD:275380 10/46 (22%)
leucine-rich repeat 362..383 CDD:275380 6/20 (30%)
leucine-rich repeat 386..405 CDD:275380 7/18 (39%)
PCC 390..>499 CDD:188093 13/30 (43%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.