DRSC/TRiP Functional Genomics Resources

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Protein Alignment TfIIS and Med26

DIOPT Version :10

Sequence 1:NP_476967.1 Gene:TfIIS / 34883 FlyBaseID:FBgn0010422 Length:313 Species:Drosophila melanogaster
Sequence 2:NP_081761.2 Gene:Med26 / 70625 MGIID:1917875 Length:588 Species:Mus musculus


Alignment Length:246 Identity:54/246 - (21%)
Similarity:100/246 - (40%) Gaps:62/246 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 LDLLKALQTLNINLDILTKTRIGMTVNELRKSSKDDEVIALAKTLIKNWKRFLASPAPTTPNNSS 92
            |:::.:|:...|..:.|.:||:|..:|::||.:|::|:...||.|:::|::.:   .|...|..:
Mouse    32 LEVISSLERYPITKEALEETRLGKLINDVRKKTKNEELAKRAKRLLRSWQKLI---EPVHQNEVA 93

  Fly    93 AK-----EGSSNN-----------SSASKSTSAAKSSSSIS----------------GKDKSSSS 125
            .:     .||:|.           :.|.||....|:.:.|.                |..:....
Mouse    94 LRALAGAAGSANGGAHNCRPEMGVAGAPKSIHDLKNRNDIQRLPGQRLDRLGSRKRRGDQRDLGH 158

  Fly   126 SSSKDKEKKGSTS---SSQTSFPSGGMTDAVRIKCREMLATALKIGEVPEGCGE--PEEMAAELE 185
            .....|..|||..   .:.:..|:.|::.:     .|.|.:.|      :|.|.  |:....|..
Mouse   159 PGPPHKVSKGSPDPLVPNASPLPTNGISGS-----PESLPSPL------DGSGHLGPDGSRLEPS 212

  Fly   186 DAIYSEFNNTDMKYKNRIRSRVANLKDPKNPGL-RGNFMCGAVTAKQLAKM 235
            |   :|.::|.:.. |.:|.|      |.:||| :....|....|.||.::
Mouse   213 D---NEKHSTKIPV-NAVRPR------PSSPGLGKPPVPCLQTKAAQLQQL 253

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TfIISNP_476967.1 TFSII 5..313 CDD:273592 54/246 (22%)
Med26NP_081761.2 TFS2N 12..86 CDD:197766 16/56 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 112..393 33/163 (20%)
Med26_M 178..405 CDD:464807 23/97 (24%)
Med26_C 407..586 CDD:464806
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 412..441
Blue background indicates that the domain is not in the aligned region.

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