DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(2)34Fc and LOC100489839

DIOPT Version :10

Sequence 1:NP_609710.1 Gene:l(2)34Fc / 34838 FlyBaseID:FBgn0261534 Length:159 Species:Drosophila melanogaster
Sequence 2:XP_017949106.2 Gene:LOC100489839 / 100489839 XenbaseID:XB-GENE-29079907 Length:550 Species:Xenopus tropicalis


Alignment Length:155 Identity:50/155 - (32%)
Similarity:79/155 - (50%) Gaps:12/155 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 RLLVLAACLAISVHAYSDGAPKAACRDLTPQH-GAKLQVTKPPYSIS-GPSHVRSDQKLTLTL-- 63
            |||||.:....||.::..|...|:|..:.||| |:..|.|..||.|: ..:..:|...:|:|:  
 Frog     4 RLLVLFSGYFASVFSFPSGQISASCDTMLPQHRGSTPQTTASPYFITVSNTTFKSGDSITVTIQS 68

  Fly    64 -GGDEFLGFMIQARD-GQNRVVGQFQVVDSVHSQTLDCS-GKDDTITHLSAQKGKPLTGITFDWI 125
             .|:.|.||:::|.. |.:...|.|.:.:. .:|.|.|| |.:..::|.|   ....:.:|..|.
 Frog    69 NSGNTFKGFLLEALSVGGDTATGTFTITNG-DTQGLSCSAGPNSAVSHTS---DSSKSSVTTSWT 129

  Fly   126 PPAGYKGNVKFMATVVQTGFVYWVG 150
            .|:| .|.|:|.|||:|....:|.|
 Frog   130 APSG-AGPVRFRATVLQGFSTFWSG 153

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(2)34FcNP_609710.1 Reeler 27..149 CDD:460411 39/128 (30%)
LOC100489839XP_017949106.2 Reeler 28..151 CDD:460411 39/127 (31%)
DOMON_SDR_2_like 169..327 CDD:187686
Cyt_b561_FRRS1_like 292..505 CDD:176490
Blue background indicates that the domain is not in the aligned region.

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