DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rk and Lgr3

DIOPT Version :10

Sequence 1:NP_476702.1 Gene:rk / 34819 FlyBaseID:FBgn0003255 Length:1360 Species:Drosophila melanogaster
Sequence 2:NP_733115.1 Gene:Lgr3 / 43098 FlyBaseID:FBgn0039354 Length:765 Species:Drosophila melanogaster


Alignment Length:805 Identity:189/805 - (23%)
Similarity:274/805 - (34%) Gaps:227/805 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   283 EGNLFYRIPTNALAGLRTLEALNLG-SNLLTIIN-----DEDFPRMPNLIVLLLKRNQIMKISAG 341
            :|.:.|   ....|.||....|:.. :||:.|.|     |..|.....|..|.||.|.|.::..|
  Fly   136 QGTILY---CGRYAKLRRFPRLSSEVTNLIIIRNNLTLRDNIFANFTRLQKLTLKYNNISRVPLG 197

  Fly   342 ALKNLTALKVLELDDNLISSLPEGL-SKLSQLQELSITSNRLRWINDTELPRSMQMLDMRANPLS 405
            :...|..|:.|||..|.:|.||.|: ..|..||.|.:.:|.|.     .||              
  Fly   198 SFSGLFHLERLELSHNNVSHLPHGVFLGLHSLQWLFLVNNHLH-----HLP-------------- 243

  Fly   406 TISPGAFRGMSKLRKLILSDVRTLRSFPELEACHALEILKLDRAGIQEVPANLCRQTPRLKSLEL 470
                                |..||.|      ..||.|.|.|                 ..|.|
  Fly   244 --------------------VEQLRFF------RRLEWLVLSR-----------------NRLTL 265

  Fly   471 KTNSLKRIPNLSSCRDLRLLDLSSNQIEKIQGKPFNGLKQLNDLLLSYNRIKALPQDAFQGIPKL 535
            :...|.:||.                              |.::.|.:|||:.:.::.|..:..|
  Fly   266 RNVQLPKIPT------------------------------LYEVYLDFNRIEYIGEETFSQLDNL 300

  Fly   536 QLLDLEGNEISYIHKEAFSGFTALEDLNLGNNIFPELPESGLRALLHLKTFNNPKLREFPPPDTF 600
            .||||:.|.|::||..||:..|.:.|:.|..|...||  ||                     :||
  Fly   301 HLLDLQHNLITHIHGRAFANLTNMRDIRLVGNPIKEL--SG---------------------ETF 342

  Fly   601 ---PRIQTLILSYAYHCCAFLPLVAMSSQKKTSQVQEAVLFPSDAEFDMTLWNNSMMNIWPQMHN 662
               .|::.|.|       |.:|:...||.                   |...|.|.:|:      
  Fly   343 LHNTRLEALSL-------ALMPIHISSSL-------------------MEPLNISFLNL------ 375

  Fly   663 LSKQLGASMHDPWETAINFNEEQLQTQTGGQIATSYMEEYFEEHDVSGPATGYGFGTGLFSGMST 727
                          |.|.::....:.....:..|..:.:.|                 .:..|: 
  Fly   376 --------------TGIRYDHIDFEAINSMRNLTYIIYDRF-----------------FYCSMT- 408

  Fly   728 EDFQPGSVQCLPMPGPFLPCADLFDWWTLRCGVWVVFLLSLLGNGTVVFVLLCSRSKMDVPRFLV 792
                |....|.|.........||.....||...||:..|::.||..|::.....|.:......::
  Fly   409 ----PRVRMCKPSTDGVSSFQDLLSKPVLRYSAWVMATLTIAGNVLVLWGRFIYRDENVAVTMVI 469

  Fly   793 CNLAAADFFMGIYLGILAIVDAATLGEFRMFAIPWQMSVLCQLSGFLAVLSSELSVYTLAVITLE 857
            .|||.||..||.||..:.:.|.....|:....:.|..|..|.|.|.|||.|||:|:..||.::||
  Fly   470 RNLALADMLMGFYLVTIGVQDYRYRNEYYKVVLDWITSWQCTLIGTLAVSSSEVSMLILAFMSLE 534

  Fly   858 RNYAITHAIHLNKRLSLKQAGYIMSVGWVFALIMALMPLV-----GVSDYRKFA-VCLPFETTTG 916
            |...|......::.:..:.....:...|:..:.:|:.|::     .:..|..:: .|.|......
  Fly   535 RFLLIADPFRGHRSIGNRVMWLALICIWITGVGLAVAPVLLWRTSTLPYYGSYSGTCFPLHIHEA 599

  Fly   917 -PASLTYVISLMFINGCAFLTLM-----GCYLKMYWAIRGSQAWNTNDSRIAKRMALLVFTDFLC 975
             |....| .:.:|:.....|.:|     ...|...|..|.:......|...|.|...:|.|||||
  Fly   600 FPMGWLY-SAFVFLGVNLLLLVMIAMLYTALLISIWRTRSATPLTLLDCEFAVRFFFIVLTDFLC 663

  Fly   976 WSPIAFFSITAIFGLQLISLEQAKIFTVFVLPLNSCCNPFLYAIMTKQFKKDC-------VTLCK 1033
            |.||....|...|... ||.:......||||||||..||.||...|.:::...       :|..|
  Fly   664 WVPIIVMKIWVFFNYN-ISDDIYAWLVVFVLPLNSAVNPLLYTFTTPKYRNQIFLRGWKKITSRK 727

  Fly  1034 HFEESRVVGGGGPGGRGAVARTKRG 1058
            ..|          .|.|.||.|..|
  Fly   728 RAE----------AGNGNVATTTTG 742

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rkNP_476702.1 LRR <157..390 CDD:443914 35/113 (31%)
leucine-rich repeat 158..179 CDD:275380
leucine-rich repeat 183..204 CDD:275380
leucine-rich repeat 205..228 CDD:275380
leucine-rich repeat 229..252 CDD:275380
leucine-rich repeat 253..276 CDD:275380
leucine-rich repeat 277..300 CDD:275380 4/16 (25%)
LRR 292..612 CDD:443914 79/329 (24%)
leucine-rich repeat 301..324 CDD:275380 7/28 (25%)
leucine-rich repeat 325..348 CDD:275380 8/22 (36%)
leucine-rich repeat 349..371 CDD:275380 10/22 (45%)
leucine-rich repeat 372..393 CDD:275380 7/20 (35%)
leucine-rich repeat 394..415 CDD:275380 0/20 (0%)
leucine-rich repeat 418..486 CDD:275380 14/67 (21%)
leucine-rich repeat 441..464 CDD:275378 5/22 (23%)
leucine-rich repeat 487..510 CDD:275380 0/22 (0%)
leucine-rich repeat 511..534 CDD:275380 6/22 (27%)
leucine-rich repeat 535..558 CDD:275380 11/22 (50%)
leucine-rich repeat 559..580 CDD:275380 7/20 (35%)
7tmA_Glyco_hormone_R 754..1028 CDD:320264 81/285 (28%)
TM helix 1 755..781 CDD:320264 8/25 (32%)
TM helix 2 788..813 CDD:320264 9/24 (38%)
TM helix 3 833..863 CDD:320264 15/29 (52%)
TM helix 4 875..897 CDD:320264 3/21 (14%)
TM helix 5 918..947 CDD:320264 5/33 (15%)
TM helix 6 956..986 CDD:320264 13/29 (45%)
TM helix 7 996..1021 CDD:320264 12/24 (50%)
Lgr3NP_733115.1 LDLa 32..65 CDD:238060
LRR 85..389 CDD:443914 91/416 (22%)
leucine-rich repeat 181..204 CDD:275380 8/22 (36%)
leucine-rich repeat 205..228 CDD:275380 10/22 (45%)
leucine-rich repeat 229..252 CDD:275380 11/67 (16%)
leucine-rich repeat 253..275 CDD:275380 9/38 (24%)
leucine-rich repeat 276..299 CDD:275380 6/22 (27%)
leucine-rich repeat 300..323 CDD:275380 11/22 (50%)
leucine-rich repeat 324..347 CDD:275380 9/45 (20%)
7tmA_Relaxin_R 431..715 CDD:320265 81/285 (28%)
TM helix 1 432..458 CDD:320265 8/25 (32%)
TM helix 2 465..490 CDD:320265 9/24 (38%)
TM helix 3 510..540 CDD:320265 15/29 (52%)
TM helix 4 552..574 CDD:320265 3/21 (14%)
TM helix 5 603..632 CDD:320265 5/29 (17%)
TM helix 6 644..674 CDD:320265 13/29 (45%)
TM helix 7 683..708 CDD:320265 12/24 (50%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.