DRSC/TRiP Functional Genomics Resources

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Protein Alignment rk and fshr-1

DIOPT Version :10

Sequence 1:NP_476702.1 Gene:rk / 34819 FlyBaseID:FBgn0003255 Length:1360 Species:Drosophila melanogaster
Sequence 2:NP_001263853.1 Gene:fshr-1 / 179381 WormBaseID:WBGene00008239 Length:932 Species:Caenorhabditis elegans


Alignment Length:1067 Identity:256/1067 - (23%)
Similarity:418/1067 - (39%) Gaps:218/1067 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   300 TLEALNLGSNLLTIINDEDFPRMPNLIVLLLKRNQIMK-ISAGALKNLTALKVLELDDN------ 357
            |..::.|.||||..|          ||:|.|:..:... :|....|:  :...|:.:|.      
 Worm     5 TYRSIQLFSNLLIFI----------LIILYLQTIECQNALSLAQTKH--SCMALKAEDGEGCTCK 57

  Fly   358 ---------------LISSLPEGLSKLSQLQELSITSNRLRWINDTELPRSMQMLDMRANPLSTI 407
                           ::|.||                        |.|...:..|.:....:|.|
 Worm    58 QTKRYGQPECCCMGLIVSQLP------------------------TNLTADVGYLYLHNTSISVI 98

  Fly   408 SPGAFRGMSKLRKLILSDVRTLR-----SFPELEACHALEILKLDRAGIQEVPANLCRQTPRLKS 467
            :|..|.....:|:|.:.:...|.     |...|.....|.::|.  ..::|:...|.....|:::
 Worm    99 TPNFFDKFPSIRELEIDNSAHLEHIDGSSLSVLSKLRKLSVVKC--PNLREISGKLLVNNTRIQN 161

  Fly   468 LELKTNSLKRIPNL--SSCRDLRL--LDLSSNQIEKIQGKPFNGLKQLNDLLLSYNRIKALPQDA 528
            :.||.|.|..:|:|  :....:.|  :|||.|:|:.|.......:| ...::||.|::..:...|
 Worm   162 VILKNNGLATMPSLRMTDAHHVLLDRIDLSGNKIKFISDSKVRNVK-ARTVVLSENKLIEISGYA 225

  Fly   529 FQGIPKLQLLDLEGN---EISYIHKEAFSGFTALEDLNLGNNIFPELPESGLRALLHLKTFNNPK 590
            |   .:.|.|.|:.|   ::..:..:||.....|:.|:|.:.....||.:||:.|..|...:.|.
 Worm   226 F---TESQFLKLKLNNNPDLRSLSVDAFKNMAGLQTLDLSHTSIDTLPINGLKKLKTLILNDVPT 287

  Fly   591 LREFPPPDTFPRIQTLILSYAYHCCAFLPLVAMSSQKKTSQVQEAVLFPSDAEFDMTLWNNSMMN 655
            |:..|...:|..::|...:|.:|||.|            ..|.           |:|:.:|.   
 Worm   288 LKSLPSVLSFTDLETAHFTYPHHCCLF------------KYVD-----------DVTMNDNG--- 326

  Fly   656 IWPQMHNLSKQLGASMHDPWETAINFNEEQLQTQTGGQIATSYMEEYFEEHDVSGPATGYGFGTG 720
               :....:|::...:.|..|........:.:| :|.......::|:.:....:||.........
 Worm   327 ---KYQRNAKEIHKRICDKREQQKVARRRKRET-SGIDFLDMLLKEWTDNSTYTGPDDADDDELP 387

  Fly   721 LFSGMSTEDFQP---------GSVQCLPMPGPFLPCADLFDWWTLRCGVWVVFLLSLLGNGTVVF 776
            .|..:..|..|.         .::.|.|.|....||.::..:..||..||||.|.:::|| .:|:
 Worm   388 PFVEIGAEPCQSIGEEVQKYYSNITCYPQPDALNPCENIVGYPFLRIAVWVVCLAAIVGN-IIVW 451

  Fly   777 VLL--CSRSKMDVPRFLVCNLAAADFFMGIYLGILAIVDAATLGEFRMFAIPWQMSVLCQLSGFL 839
            .||  ....:|.:....:.|::.||...||||.:|||.||....|:...|:.||....|:.:|||
 Worm   452 ALLGIVYEKRMRMHYLYMINMSVADMVTGIYLAVLAIADAKMSDEYYRHAVWWQTGWGCRAAGFL 516

  Fly   840 AVLSSELSVYTLAVITLERNYAITHAIHLNKRLSLKQAGYIMSVGWVFALIMALMPLVGVSDYRK 904
            ||.:|||.:.::.:|..|.:|. |......:|||.|....:|..||:||:|||::|...||.|.:
 Worm   517 AVFASELGIISMFLIAFEMSYN-TRQSFRGRRLSPKVGVLLMIGGWLFAIIMAILPWFDVSSYSE 580

  Fly   905 FAVCLPFETTT--GPASLTYVISLMFINGCAFLTLMGCYLKMYWAIRGSQAWNTNDSRIAKRMAL 967
            .:||||....|  ..:.|.:.:|..|:...|.....|..:||   ::.::. ...|..:..:|.:
 Worm   581 SSVCLPLRAATIFDKSYLIFGLSFNFLAFAAMALSYGFIVKM---LKENET-REEDRALITKMTV 641

  Fly   968 LVFTDFLCWSPIAFFSITAIFGLQLISLEQAKIFTVFVLPLNSCCNPFLYAIMTKQFKKDCVTLC 1032
            ||.||.:||.|..||..||..|..|:||..||...||..|:|:..|||||...|:        :.
 Worm   642 LVVTDLICWFPTLFFGFTATIGFPLLSLSSAKFVLVFFFPINAFANPFLYVFFTE--------VI 698

  Fly  1033 KHFEESRVVGGGGPGGRGAVARTKRGDLPPPLLPAAAVAH-----PPGC-RCLRMLPSEMPNWH- 1090
            :|...|:.:        ..:.|...|    ||..|:::::     |||. |..|..|:.....| 
 Worm   699 QHRVRSKTL--------PVIRRITTG----PLNAASSLSNFYHSQPPGAHRRSRDEPTSPSGMHL 751

  Fly  1091 ---KMEQTPSMWQRLRTFCCGENRRRRKQRRQPQQRRQRAYTAAAANPYQYQF------AELRQQ 1146
               ::.||.|:....|    |.:..|..........|:     |:|:| :..|      ...|..
 Worm   752 AVTQVRQTTSLNSTPR----GSDVSRASDGMLFDYDRR-----ASASP-RVSFDIPISPTTPRSD 806

  Fly  1147 RQNR-------ASSISSENFCSSRSSSWRHGPPSSAPVPPGNCSMPLKMLEPHAH-PHGHGRRRH 1203
            |:||       .|||...:..|..||.                       ..|.| ||...:.|.
 Worm   807 RKNRISLLKRIVSSIPEVSDLSEHSSE-----------------------SHHEHVPHPRRKLRS 848

  Fly  1204 SAWLITRKTSQDSNLSSSRNDSSASATTASTSTFRLSRSSAGSSTPLPSIIAHNGKAQLDAVKPR 1268
            |...|.....:....:.|...|.||:..:.....|:|.:|..||...|.:...|....:...:|.
 Worm   849 SLNRILALGRRQEGSADSGRGSIASSAGSRDQNERVSLTSNASSILSPLLSPTNSNILILPPEPS 913

  Fly  1269 LVRQEAVQEEEDSSPPRLGVRFLPTIP 1295
            ..|:::.                |.||
 Worm   914 KNRRKST----------------PAIP 924

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rkNP_476702.1 LRR <157..390 CDD:443914 19/111 (17%)
leucine-rich repeat 158..179 CDD:275380
leucine-rich repeat 183..204 CDD:275380
leucine-rich repeat 205..228 CDD:275380
leucine-rich repeat 229..252 CDD:275380
leucine-rich repeat 253..276 CDD:275380
leucine-rich repeat 277..300 CDD:275380 256/1067 (24%)
LRR 292..612 CDD:443914 75/345 (22%)
leucine-rich repeat 301..324 CDD:275380 6/22 (27%)
leucine-rich repeat 325..348 CDD:275380 6/23 (26%)
leucine-rich repeat 349..371 CDD:275380 5/42 (12%)
leucine-rich repeat 372..393 CDD:275380 2/20 (10%)
leucine-rich repeat 394..415 CDD:275380 5/20 (25%)
leucine-rich repeat 418..486 CDD:275380 16/74 (22%)
leucine-rich repeat 441..464 CDD:275378 4/22 (18%)
leucine-rich repeat 487..510 CDD:275380 7/24 (29%)
leucine-rich repeat 511..534 CDD:275380 5/22 (23%)
leucine-rich repeat 535..558 CDD:275380 6/25 (24%)
leucine-rich repeat 559..580 CDD:275380 7/20 (35%)
7tmA_Glyco_hormone_R 754..1028 CDD:320264 99/277 (36%)
TM helix 1 755..781 CDD:320264 12/27 (44%)
TM helix 2 788..813 CDD:320264 10/24 (42%)
TM helix 3 833..863 CDD:320264 12/29 (41%)
TM helix 4 875..897 CDD:320264 10/21 (48%)
TM helix 5 918..947 CDD:320264 7/28 (25%)
TM helix 6 956..986 CDD:320264 11/29 (38%)
TM helix 7 996..1021 CDD:320264 11/24 (46%)
fshr-1NP_001263853.1 LRR 72..>302 CDD:443914 58/259 (22%)
leucine-rich repeat 87..108 CDD:275380 5/20 (25%)
leucine-rich repeat 109..133 CDD:275380 5/23 (22%)
leucine-rich repeat 134..158 CDD:275380 4/25 (16%)
leucine-rich repeat 159..174 CDD:275380 4/14 (29%)
leucine-rich repeat 185..208 CDD:275380 8/23 (35%)
leucine-rich repeat 209..231 CDD:275380 5/24 (21%)
leucine-rich repeat 232..255 CDD:275380 5/22 (23%)
leucine-rich repeat 256..276 CDD:275380 7/19 (37%)
7tmA_Glyco_hormone_R 430..702 CDD:320264 100/285 (35%)
TM helix 1 431..457 CDD:320264 12/26 (46%)
TM helix 2 465..490 CDD:320264 10/24 (42%)
TM helix 3 510..540 CDD:320264 12/30 (40%)
TM helix 4 551..573 CDD:320264 10/21 (48%)
TM helix 5 593..622 CDD:320264 5/28 (18%)
TM helix 6 630..660 CDD:320264 11/29 (38%)
TM helix 7 670..695 CDD:320264 11/24 (46%)
Blue background indicates that the domain is not in the aligned region.

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