DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Hacd2 and PAS2

DIOPT Version :9

Sequence 1:	NP_609655.2	Gene:	Hacd2 / 34762	FlyBaseID:	FBgn0032524	Length:	371	Species:	Drosophila melanogaster
Sequence 2:	NP_001190277.1	Gene:	PAS2 / 830912	AraportID:	AT5G10480	Length:	230	Species:	Arabidopsis thaliana

Alignment Length:	237	Identity:	69/237 - (29%)
Similarity:	125/237 - (52%)	Gaps:	34/237 - (14%)

- Green bases have known domain annotations that are detailed below.

  Fly   148 KKVYMIFYNLAMFVGYLYIMVVMGVLYYRDGVDSIGKT-YANVGNAF-KFIQLLQ---YLEVMHP 207
            ::||:..||..:|.|:..::.:        .:.::.:| |.||.:|. |.:||.|   .||::|.
plant     9 RRVYLTLYNWIVFAGWAQVLYL--------AITTLKETGYENVYDAIEKPLQLAQTAAVLEILHG 65

  Fly   208 MFGYTKGSPV---VPFFQVSGRNFILFLMIDMEPRMYAKPVVFYVFIIWS---------LVELVR 260
            :.|..: |||   :|  |:..|.|:.:.::...|.:.:..:|..:.|.||         :||::|
plant    66 LVGLVR-SPVSATLP--QIGSRLFLTWGILYSFPEVRSHFLVTSLVISWSITEFPITTWIVEIIR 127

  Fly   261 YPYY-LAQLLGREVGLLTWLRYTIWIPLYPMGILCE-GIIVLRNIPYIEETKRFTVEMPNPWNIT 323
            |.:: ..:.||.......||||:.::.|||.||..| |:|.|. :|:|:.::.::|.|||..|.:
plant   128 YSFFGFKEALGFAPSWHLWLRYSSFLLLYPTGITSEVGLIYLA-LPHIKTSEMYSVRMPNILNFS 191

  Fly   324 FDMVLFLKIYLMLLIIPGSYLVMSHMAKLRSKKLGKGRAKRQ 365
            ||. .:..|.::.:.:|||..:..:|...|.:.|.|  :||:
plant   192 FDF-FYATILVLAIYVPGSPHMYRYMLGQRKRALSK--SKRE 230

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Hacd2	NP_609655.2	p23_hB-ind1_like	6..114	CDD:107222
Hacd2	NP_609655.2	PTPLA	197..357	CDD:282269	53/176 (30%)
PAS2	NP_001190277.1	PLN02838	1..230	CDD:166479	68/235 (29%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG5198
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1458293at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	1	0.960	-	-
	4	3.780