DRSC/TRiP Functional Genomics Resources

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Protein Alignment nub and Pou3f4

DIOPT Version :10

Sequence 1:NP_001097153.1 Gene:nub / 34669 FlyBaseID:FBgn0085424 Length:961 Species:Drosophila melanogaster
Sequence 2:NP_058948.1 Gene:Pou3f4 / 29589 RGDID:61947 Length:361 Species:Rattus norvegicus


Alignment Length:368 Identity:146/368 - (39%)
Similarity:180/368 - (48%) Gaps:85/368 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   625 SYMELLRSGSLGLAQDDPALTAQVAAAQFLMQSQLQALSQASQQL-------------------- 669
            |...|:.:.|.|:.|..|....|    :.|....||.:......|                    
  Rat    13 SSSSLVHADSAGMQQGSPFRNPQ----KLLQSDYLQGVPSNGHPLGHHWVTSLSDGGPWSSTLAT 73

  Fly   670 QALQKQQQRQVDEPLQL----NHKMTQQPRSSTPHSIRSPIAIRSPASSPQQLHH--HHHHP-LQ 727
            ..|.:|..:...|.|||    :|:                        ||...||  |.:|| ..
  Rat    74 SPLDQQDVKPGREDLQLGAIIHHR------------------------SPHVAHHSPHTNHPNAW 114

  Fly   728 ITPPSSAASLKLSGM-----LTPSTPTSGTQMSQGTTTPQPKTVASAAAARAAGEP--------- 778
            ...|:..:|:..||.     ..|....|| .:..|..||.|...::.:......||         
  Rat   115 GASPAPNSSITSSGQPLNVYSQPGFTVSG-MLEHGGLTPPPAAASTQSLHPVLREPPDHGELGSH 178

  Fly   779 -----SPEETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFK 838
                 |.|||...:|||||||.||||||||||||.|||||:|.||||.||||||.|||||.||||
  Rat   179 HCQDHSDEETPTSDELEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFK 243

  Fly   839 NMCKLKPLLQKWLDDADRTIQATGGVFDPAALQATVSTPEIIGRRRKKRTSIETTIRGALEKAFL 903
            |||||||||.|||::||   .:||   .|.::....:.    ||:||||||||.:::|.||..||
  Rat   244 NMCKLKPLLNKWLEEAD---SSTG---SPTSIDKIAAQ----GRKRKKRTSIEVSVKGVLETHFL 298

  Fly   904 ANQKPTSEEITQLADRLSMEKEVVRVWFCNRRQKEKRINPSLD 946
            ...||.::||:.|||.|.:||||||||||||||||||:.|..|
  Rat   299 KCPKPAAQEISSLADSLQLEKEVVRVWFCNRRQKEKRMTPPGD 341

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nubNP_001097153.1 POU 791..855 CDD:197673 53/63 (84%)
Homeodomain 884..940 CDD:459649 37/55 (67%)
Pou3f4NP_058948.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 99..131 10/31 (32%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 144..192 10/47 (21%)
POU 186..260 CDD:197673 59/73 (81%)
Homeodomain 279..335 CDD:459649 37/55 (67%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 334..361 4/8 (50%)

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