DRSC/TRiP Functional Genomics Resources

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Protein Alignment nub and pou3f4

DIOPT Version :10

Sequence 1:NP_001097153.1 Gene:nub / 34669 FlyBaseID:FBgn0085424 Length:961 Species:Drosophila melanogaster
Sequence 2:NP_001090728.1 Gene:pou3f4 / 100036711 XenbaseID:XB-GENE-479667 Length:360 Species:Xenopus tropicalis


Alignment Length:364 Identity:152/364 - (41%)
Similarity:190/364 - (52%) Gaps:63/364 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   620 TQQFNSYMELLRSGSLGLAQDDPALTAQVAA---AQFLMQSQ----------------LQALSQA 665
            |...|.| .:|.|.||   ..|.|:..|.:.   .|.|:||.                :.:||.|
 Frog     3 TAASNPY-SILSSSSL---VHDSAIMQQGSPFRNPQKLLQSDYLQGVPSNGHPLGHHWVTSLSDA 63

  Fly   666 SQQLQALQKQQQRQVD-----EPLQLN--------HKMTQQPRSSTPHSIRSPIAIRSPASSPQQ 717
            :....:|......|.|     |.|||.        |.....|.::.|::..:..|..|..:|..|
 Frog    64 NPWSTSLGSSPLDQQDIKPGREDLQLGAIIHHRSPHVTHHSPHTNHPNAWGASPAHNSSLTSNGQ 128

  Fly   718 LHHHHHHPLQITPPSSAASLKLSGM-----LTPSTPTSGTQMSQGTTTPQPKTVASAAAARAAGE 777
                   |:.:   .|.:...:|||     ||| .|.|||..|......:|.......:.... :
 Frog   129 -------PINV---YSQSGFTVSGMLDHGGLTP-PPPSGTTQSLHPVLREPVDHGDLGSHHCQ-D 181

  Fly   778 PSPEETTDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCK 842
            .|.|||...:|||||||.||||||||||||.|||||:|.||||.|||.||.|||||.||||||||
 Frog   182 HSDEETPTSDELEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQATICRFEALQLSFKNMCK 246

  Fly   843 LKPLLQKWLDDADRTIQATGGVFDPAALQATVSTPEIIGRRRKKRTSIETTIRGALEKAFLANQK 907
            |||||.|||::||   .:||   .|.::....:.    ||:||||||||.:::|.||..||...|
 Frog   247 LKPLLNKWLEEAD---SSTG---SPTSIDKIAAQ----GRKRKKRTSIEVSVKGVLETHFLKCPK 301

  Fly   908 PTSEEITQLADRLSMEKEVVRVWFCNRRQKEKRINPSLD 946
            |.::||:.|||.|.:||||||||||||||||||:.|..|
 Frog   302 PAAQEISSLADSLQLEKEVVRVWFCNRRQKEKRMTPPGD 340

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nubNP_001097153.1 POU 791..855 CDD:197673 52/63 (83%)
Homeodomain 884..940 CDD:459649 37/55 (67%)
pou3f4NP_001090728.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 98..130 7/38 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 143..191 14/49 (29%)
POU 185..259 CDD:197673 58/73 (79%)
Homeodomain 278..334 CDD:459649 37/55 (67%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 332..360 5/9 (56%)

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