DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pkd2 and Pkd1l1

DIOPT Version :9

Sequence 1:NP_609561.2 Gene:Pkd2 / 34651 FlyBaseID:FBgn0041195 Length:924 Species:Drosophila melanogaster
Sequence 2:XP_038948500.1 Gene:Pkd1l1 / 289796 RGDID:1564724 Length:2586 Species:Rattus norvegicus


Alignment Length:763 Identity:136/763 - (17%)
Similarity:246/763 - (32%) Gaps:230/763 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   195 GSSTPPS---------PSRGHRAPSIIAASALQNRAKTNRILYTTDEEVREALVEFSVFIIFLIL 250
            |:..||.         ..|..:.||......::.|.:..|::       :.||.:.::..:.|:|
  Rat  1975 GAPLPPQVLAARQRERHLRWAQTPSGPKFRVMRERLRRERLM-------QAALRDVTMHSVMLLL 2032

  Fly   251 TSLVVLSVRHTYMFYFNDTMKKLFTNREMVVAPSVTVGFEKLITVPDWWDYLKYNFLVTLHGDLT 315
            ...:.........:..|..:::.||.       :.......|.:..||||:.....|..||.:  
  Rat  2033 LLFIAYGRFCPGEYSLNQAIRRAFTR-------NAHHSLGDLSSTEDWWDWTLSTLLDGLHPE-- 2088

  Fly   316 FMDDAQANLTSMPPEGSEQGSEQGSEQGSEQSPEEVVGEAPEEAPEMDRLQEDFKYNGNPYIDLR 380
                      .||      .:..||:.|:                                    
  Rat  2089 ----------RMP------ATAWGSQPGA------------------------------------ 2101

  Fly   381 GHRRAKRQSGVDGNSEDGSEDVSGNYLKDDSDSIQANMSFHHLEGRVFLYENLLLGPPRLRQIRV 445
                                                      |.|:..     |:||..::|::|
  Rat  2102 ------------------------------------------LGGQCH-----LIGPSVIKQLKV 2119

  Fly   446 RKESCYVNDAFIRYFNTCYA--AYSSGAEDRKPMHKGSPFRTMHDLD-----STPIWTVLAFYRT 503
            ...:            .|.|  .:|...||..|||.       |.||     .||........:.
  Rat  2120 SAGT------------ACVAPKPFSELVEDVLPMHS-------HALDLENRNVTPDDPKTCGVKK 2165

  Fly   504 GGYTVNLDYDKDRNVKIINDLKDIHWLDRGSRLCLVEFNLFNENTDIFQSIKLIAEIPPTGGVIP 568
            ..||.:|...:......:..|:...|:|..:|...|.|.|:|..|.:|.|:.|.||...|.|::.
  Rat  2166 ESYTHSLGRTRHEAHAALTALRASRWIDHSTRAVSVHFTLYNPPTRLFTSVTLGAEFLSTRGLVS 2230

  Fly   569 QAHLQTVKMYSFFTDRSM--LMTVIYIFWYIMVIYYTIYEITEIRKSGIKIYFCSMLNILDCAIL 631
            .:.:::..:  |:.|.::  |:.:..:.:.::.:.:..:::.|:...||..|:......|:.: :
  Rat  2231 SSLIESFSI--FYRDSALQCLLMLSELLFLVLNMIHLCFQLWEMATKGILSYWRKPRQWLELS-M 2292

  Fly   632 LGCYLALVYNIWH-SFKVMSLTARAHSDVTYQSLDV--LCFWNIIYVDMMAILAFLVWIKIFKFI 693
            :|..||......| :....::|.:.|..:..:.:|:  :..||.....:..||.||..:|.....
  Rat  2293 VGVALAYCAASGHLTTLAENITDQFHKGLYQRFVDISLMVSWNQRARCLQGILLFLWMLKCVHLF 2357

  Fly   694 SFNKTLVQFTTTLKRCSKDLAGFSLMFGIVFLAYAQLGLLLFGTKHPDFRNFITSILTMIR---- 754
            |...|:..|:..:..|.   ..|||..         :|.||... |...|.|:....|:.|    
  Rat  2358 SSLSTMAPFSAMMGHCP---GVFSLQL---------VGALLLAA-HSHLRWFLLYTSTLSRGTSA 2409

  Fly   755 -----MIL-------GDFQYNLIEQANRVLGPIYFLTYILLVFFILLNMFLAIIMETYNTVKGEI 807
                 ::|       .|.|:|.:|..:|.:. .|:.|..||:..:...|..|..:..:...|.  
  Rat  2410 EAFPGLLLQFPGRSQKDSQHNHLESDHRAVN-CYYGTLFLLLATLGFRMLRATSLTLFQDRKS-- 2471

  Fly   808 TQGRSHLGSYIYRKLSGMLYWITHCGRKRRHHPQASETEDKDAEHDVGAAHDETHEIRKNMTPAE 872
                .|..|.:..|...:..|.......|.....:.|||                      ...:
  Rat  2472 ----FHRKSLVTLKDVAVSMWHRLLTFLRLETTTSGETE----------------------VTTD 2510

  Fly   873 QQYFKDIPQGENQDMVRLNNRVGLLEEILEKLINNMDDI-LKRVEKDY 919
            ..|:             |:....||:|:|.|:....|.: |..:||.:
  Rat  2511 HIYY-------------LDEFSSLLDELLMKIDGLSDSLELSILEKQW 2545

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pkd2NP_609561.2 PKD_channel 402..803 CDD:285288 88/428 (21%)
Pkd1l1XP_038948500.1 PCC <242..725 CDD:188093
GPS 1398..1436 CDD:413374
PLAT_polycystin 1504..1622 CDD:238850
PKD_channel 2063..2389 CDD:400395 84/460 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166345341
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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