DRSC/TRiP Functional Genomics Resources

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Protein Alignment rho-6 and AT5G25640

DIOPT Version :10

Sequence 1:NP_788038.1 Gene:rho-6 / 34640 FlyBaseID:FBgn0032415 Length:263 Species:Drosophila melanogaster
Sequence 2:NP_001318651.1 Gene:AT5G25640 / 832640 AraportID:AT5G25640 Length:287 Species:Arabidopsis thaliana


Alignment Length:214 Identity:41/214 - (19%)
Similarity:86/214 - (40%) Gaps:40/214 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 LLLLPENSTDSDGNPASVAFSAESHKKFIDDLTRTIDVGHVRRKRLWRVPWFILLMSFVQISLHW 87
            |..:...|::||..|......|:..:|.::.......:              ||:...:.|:.|:
plant    57 LTFVRSRSSESDVTPQFELDKAQDKQKPLNQANGIFLI--------------ILINLAIFIAQHF 107

  Fly    88 IASECMQKVLIFK--PEWNVEYWRLLTYMLLHSDYWHLSLNICFQCFIGICLEVEQGHWRLAVVY 150
            .....::.:.:..  |.|    ::.:|....|:::.|||.|:......|..:|.|:|::.|.:.|
plant   108 YQVRGIKSMYLSSDFPVW----YQFVTATFCHANWNHLSSNLFLLYIFGKIVEEEKGNFGLWLSY 168

  Fly   151 MVGGVAGSLANAW--LQPHLHLMGASAGVYAMLGSHVPHLVLNFSQLSHRFARIASLLIL----- 208
            :..||..::. :|  |.|:....|||..|:.:.      ::....::|..:::...:|||     
plant   169 LFTGVGANMV-SWFTLPPNSFFSGASGAVFGLF------VISVLVKMSRGWSKFLEVLILGQFVM 226

  Fly   209 ------LLSDVGFTTYHFC 221
                  :.:..|.....||
plant   227 KRVSEAVQTSTGLLETKFC 245

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rho-6NP_788038.1 Rhomboid 106..252 CDD:426384 28/129 (22%)
AT5G25640NP_001318651.1 GlpG 91..>200 CDD:440469 27/127 (21%)

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