DRSC/TRiP Functional Genomics Resources

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Protein Alignment rho-6 and Rhbdf1

DIOPT Version :10

Sequence 1:NP_788038.1 Gene:rho-6 / 34640 FlyBaseID:FBgn0032415 Length:263 Species:Drosophila melanogaster
Sequence 2:XP_038941805.1 Gene:Rhbdf1 / 303008 RGDID:1305075 Length:907 Species:Rattus norvegicus


Alignment Length:160 Identity:42/160 - (26%)
Similarity:72/160 - (45%) Gaps:13/160 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    92 CMQKVL----IFKPEWNVEYWRLLTYMLLHSDYWHLSLNICFQCFIGICLEVEQGHWRLAVVYMV 152
            ||..|.    ...||...:::||...:.||:...|..:::|||..:...||...|..|:|::|::
  Rat   686 CMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAGILHCLVSVCFQMTVLRDLEKLAGWHRIAIIYLL 750

  Fly   153 GGVAGSLANAWLQPHLHLMGASAGVYAMLGSHVPHLVLNFSQLSHRFARIASLLILLLSDVGFTT 217
            .||.|:||:|...|:...:|.:...:.:|......|..::..|:..:.....||.::|....|..
  Rat   751 SGVTGNLASAIFLPYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFAFGL 815

  Fly   218 YHFCHNHNRNPRTSLEAHIGGGVAGILCGF 247
            ..:..|.         |||.|.|:|:...|
  Rat   816 LPWIDNF---------AHISGFVSGLFLSF 836

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rho-6NP_788038.1 Rhomboid 106..252 CDD:426384 37/142 (26%)
Rhbdf1XP_038941805.1 Rhomboid_SP 142..336 CDD:463639
Rhomboid 699..842 CDD:426384 39/147 (27%)
Blue background indicates that the domain is not in the aligned region.

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