DRSC/TRiP Functional Genomics Resources

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Protein Alignment rho-6 and rom-2

DIOPT Version :10

Sequence 1:NP_788038.1 Gene:rho-6 / 34640 FlyBaseID:FBgn0032415 Length:263 Species:Drosophila melanogaster
Sequence 2:NP_001366679.1 Gene:rom-2 / 183564 WormBaseID:WBGene00004401 Length:348 Species:Caenorhabditis elegans


Alignment Length:206 Identity:57/206 - (27%)
Similarity:105/206 - (50%) Gaps:18/206 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 PWFILLMSFVQISLH-----------WIASECMQKVLIFKPEWNV-EYWRLLTYMLLHSDYWHLS 124
            |.|::.:|.||::.:           |::........:...:::: |.|||.||.|::...:|:.
 Worm   122 PIFLIFLSIVQLAFYLYYVVDSSEGVWLSGPIPTMSPLIVSQYHLPELWRLFTYCLINVGIFHII 186

  Fly   125 LNICFQCFIGICLEVEQGHWRLAVVYMVGGVAGSLANAWLQPHLHLMGASAGVYAMLGSHVPHLV 189
            .||..|..||:.||:.. .||:.::|.:|.:.||:.:..|.|.:.|.|.:||.::::.||:..:.
 Worm   187 FNILIQLAIGVPLELVH-RWRIYILYFMGVLFGSILSLALDPTVFLCGGAAGSFSLIASHITTIA 250

  Fly   190 LNFSQLSHRFARIASLLILLLSDVGFTTYH--FCHNHNRNPRTSLEAHIGGGVAGILCGFIVYRR 252
            .||.::.:...|:..|::....|.....|.  |.   .|..:.|:..|:||.|||||..||::|.
 Worm   251 TNFKEMENATCRLPILIVFAALDYVLAVYQRFFA---PRIDKVSMYGHLGGLVAGILFTFILFRG 312

  Fly   253 LQPANQKAIYF 263
            .:|:....:.|
 Worm   313 SKPSRFYTVSF 323

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rho-6NP_788038.1 Rhomboid 106..252 CDD:426384 48/147 (33%)
rom-2NP_001366679.1 EF-hand_7 21..82 CDD:463900
Rhomboid 165..313 CDD:426384 49/151 (32%)
Blue background indicates that the domain is not in the aligned region.

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