DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment salr and sall4

DIOPT Version :10

Sequence 1:NP_523548.1 Gene:salr / 34568 FlyBaseID:FBgn0000287 Length:1267 Species:Drosophila melanogaster
Sequence 2:NP_001074078.1 Gene:sall4 / 572527 ZFINID:ZDB-GENE-060328-2 Length:1091 Species:Danio rerio


Alignment Length:1350 Identity:363/1350 - (26%)
Similarity:530/1350 - (39%) Gaps:482/1350 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 ERERDRDRDRD----RDRD--------RERDRDTLLAKELDADSNN---NGTE--PQMEAEAVPE 70
            |.||:..:.:.    :|.|        .:|....:|:...|..:|:   :|.|  ..||.|.:..
Zfish    63 EHERNCTKSQQVVIMKDGDGSEVPPEFSQRSPGDVLSDPCDQSTNSYSKHGAESDEMMEGEFMLN 127

  Fly    71 SDTERETAEERGEEQEPENSNEALDLS---LISSGGRESLPGSGHVSLEALQHTKVAVAQFAATA 132
            .|             .|.|.::.:..|   :.||..::|     :|:||::..|||||.|.::.:
Zfish   128 QD-------------NPSNHDQEVSGSPGYVASSKLQDS-----NVTLESMAATKVAVTQHSSNS 174

  Fly   133 MAGN------HQSADLA--MVQSTIFNVQRQHLMQLQLIQ------------------------- 164
            .:..      ||...||  |:...:.::|:|.|.|:||.:                         
Zfish   175 SSQKSPPPQPHQDTLLAIPMILEQLVSLQQQQLQQIQLTEQIRIQVAMVAPPSLHAAVGAVMDPL 239

  Fly   165 -----HLQSQLKRAEAAALGRHSHSDEEEEEPEPEPEPKKQPTNGLKEELELEQGPESEQDQESR 224
                 ||..||. |.||.:|:.:.|                      :.|.||...:::..| |.
Zfish   240 KALGAHLSQQLS-AAAALIGKRTGS----------------------QSLSLEALKQAKLPQ-SA 280

  Fly   225 REENSKTDKRGTEDRKAEPEGYQSMMCDISSSLASSIITNHDPPPAPNEPNCLEMLQRRTEEVLD 289
            ....|.....|:...|.:.:|    :.|::|.|         |...|..|..:.         |.
Zfish   281 TIPTSLPGGLGSIPLKPDLKG----LPDLASRL---------PALLPQSPGVIG---------LQ 323

  Fly   290 SASQSLHAAQMQEEYSEYASKEAQSRGEI-------------FKHRCKYCGKIFGSYSALQIHLR 341
            |...:| |..|.      .||:|:::|.:             |||:||:|||.||:.||||||||
Zfish   324 SPFNNL-ATSMD------PSKKAKTKGPVVSEPPKNVSVEHSFKHKCKFCGKTFGNDSALQIHLR 381

  Fly   342 SHTGERPFVCNVCGSKFTTKGNLKVHYQRHTQIFPPMLLPPGVAPNVGHSGQGQVQGEQYPIRLP 406
            ||||||||.||:||::||||||||||:|||.:.:|.:.:.|...|                    
Zfish   382 SHTGERPFKCNICGNRFTTKGNLKVHFQRHKEKYPHIKMNPHPVP-------------------- 426

  Fly   407 FAPPVAPVGQEQHQNQVEEPEEIRQEIPVPQAED--------LSKPMVKEKEKSHSPVERVKTPK 463
                       :|.:.:.....|...:.||..|:        |..|........|.||.:...|.
Zfish   427 -----------EHLDNMPSNNGIPYGMSVPMEENGFSETKPVLGVPTTGPPAGPHPPVLQAFKPS 480

  Fly   464 EVKTDAALPSSEKPEKEISKPVVTSSRRNGSVRKRQTSAVSPPQEDRERDLVEHLHIAKLVRRSS 528
            .....|..|.|::|....|.....||...|     |..|.|...:|....:|...||    ..:|
Zfish   481 FDIPAAGDPYSQRPSSSGSDGASISSGMFG-----QDIAGSDQSKDSPDAMVGLHHI----NGNS 536

  Fly   529 ASRESQPAEYSLAQMERIIDKSWEDLIEIDKTSETSKLQQLVDNIENKLTDPNQCIFCQKVMSCR 593
            .:.|:                          .|.|:||||:||.:|.:..|||:|:.|.:|:||:
Zfish   537 LTGEN--------------------------GSGTAKLQQMVDCLEKRTNDPNECVICHRVLSCQ 575

  Fly   594 SSLQMHIRTHTGERPFRCKICGRAFATKGNLKAHMSIHKIKPPMRSQFKCPVCHQKFSNGIILQQ 658
            |||:||.||||||||::||||||||:||||||||..:|:...|::.|..||:||:||:|.::|||
Zfish   576 SSLKMHYRTHTGERPYKCKICGRAFSTKGNLKAHYGVHRANTPLKMQHSCPICHKKFTNAVVLQQ 640

  Fly   659 HIRIHTMDDGSGGQGAPAANPGEAERLGIEDQNSNKSLGTSDTLDFSTTISDHSGQRSESSQGGD 723
            |||:|     .||| .|                             :|.:.::..:..|:     
Zfish   641 HIRMH-----MGGQ-IP-----------------------------NTPLPENQFESPEA----- 665

  Fly   724 FDEFMTMDSTDDSRDNSSAATATPHPLERERDREKERERRIPNDCSDERSHSNPDLTGGRSESGE 788
            .|..||.|.|.||..:..:.        .|:|.|.:.:.::.                       
Zfish   666 LDSSMTEDKTIDSNGHEESM--------EEQDFELDNQEKLN----------------------- 699

  Fly   789 MPAMDLSSPSSNSGRIFATGLANGAAGGGSGNGGLPMLGMPMPPNLLLMAAAREEMHALGHAHAK 853
                            ::||                    |.|       ..:::.        .
Zfish   700 ----------------YSTG--------------------PQP-------VTKDDQ--------T 713

  Fly   854 FPLLPFGPLGFMGLHPPPNVCNLCFKMLPSLAALESHL-----------QSEHAKEPATG----- 902
            ||..|                    .|...:.|||:|:           ||..|.|..:|     
Zfish   714 FPGQP--------------------SMFTGITALENHMKNLTSALNLQRQSSTASESDSGLKDSP 758

  Fly   903 ---------HAQRPQCSDAGSPYGAKLTLNP------NLFAKKPPSSSSSSSGEKLPESSNPPFP 952
                     :.:.|..||:.|.:    :|:|      |..:|.|.|::...|.:..|::..|...
Zfish   759 LGSGEVDYKNDRSPVVSDSVSFH----SLSPIDGPPSNGPSKSPESTNLDDSVKSRPDTDAPQDF 819

  Fly   953 AENPPA---------TPIKEDPDQEQLMVEEGASAGEGSGTGATSNYPQEAGDAE-------QSL 1001
            :||..|         .||||:|         |.|...|           |.|.::       .||
Zfish   820 SENNGALDLTSSFTSKPIKEEP---------GLSFASG-----------EYGSSQLPFMRVPPSL 864

  Fly  1002 MKMQLH--------AHRFPASPLDFQQALMSAGPPTSSLDPPVNNK-HFCHVCRRNFSSSSALQI 1057
            :|:::.        ||...:|.|. |.|   |.||.||..|..:.| |.|::|.:||||:|||||
Zfish   865 VKLEMQIPPETPMGAHGLYSSQLP-QGA---ATPPASSSAPRRSTKQHLCNMCGKNFSSASALQI 925

  Fly  1058 HMRTHTGDKPFQCNVCQKAFTTKGNLKVHMGTHMWTNPTSRRGRRMSLELPMR------------ 1110
            |.|||||:|||.|::|.:|||||||||||:|||||.| |:|||:|:||:.||.            
Zfish   926 HERTHTGEKPFACSICGRAFTTKGNLKVHVGTHMWNN-TARRGQRLSLDNPMALMAMGNEPKMMP 989

  Fly  1111 ---PGPNSGQGHPGSSAEQEFMQRRPELFFPYLPPFFNGLPPKPGELSPGAFPNIPPP-----PF 1167
               |.|......|        :...|.::..|...|.|||..|..|:|......||.|     |.
Zfish   990 DMLPPPKDLIPPP--------INFDPSMWNQYAAAFTNGLTMKTNEISVIQNGGIPLPGSLGGPL 1046

  Fly  1168 --ANGGKYPYPPGLLGFPGFLAQHPYILERRSSSKSPTPEPAQSPALREE 1215
              :.||........:|.||.:|:    :|:..|...     |:.|...||
Zfish  1047 VGSTGGITKMESSQMGIPGTVAE----MEKNGSESI-----AKFPHFMEE 1087

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
salrNP_523548.1 SUF4-like 320..>371 CDD:411020 40/50 (80%)
C2H2 Zn finger 323..344 CDD:411020 16/20 (80%)
C2H2 Zn finger 323..343 CDD:275368 15/19 (79%)
C2H2 Zn finger 351..371 CDD:411020 15/19 (79%)
C2H2 Zn finger 351..371 CDD:275368 15/19 (79%)
SUF4-like 583..>636 CDD:411020 35/52 (67%)
C2H2 Zn finger 583..604 CDD:411020 12/20 (60%)
C2H2 Zn finger 583..603 CDD:275368 11/19 (58%)
zf-H2C2_2 595..620 CDD:463886 20/24 (83%)
C2H2 Zn finger 611..631 CDD:411020 16/19 (84%)
C2H2 Zn finger 611..631 CDD:275368 16/19 (84%)
C2H2 Zn finger 643..663 CDD:275368 13/19 (68%)
lambda-1 1013..>1061 CDD:212564 24/48 (50%)
SUF4-like 1039..>1087 CDD:411020 34/48 (71%)
C2H2 Zn finger 1042..1063 CDD:411020 14/20 (70%)
C2H2 Zn finger 1042..1062 CDD:275368 13/19 (68%)
C2H2 Zn finger 1070..1090 CDD:275368 14/19 (74%)
C2H2 Zn finger 1070..1087 CDD:411020 12/16 (75%)
sall4NP_001074078.1 SUF4-like 360..442 CDD:411020 47/112 (42%)
C2H2 Zn finger 363..384 CDD:411020 16/20 (80%)
C2H2 Zn finger 363..383 CDD:275368 15/19 (79%)
C2H2 Zn finger 391..411 CDD:411020 15/19 (79%)
C2H2 Zn finger 391..411 CDD:275368 15/19 (79%)
C2H2 Zn finger 565..585 CDD:275368 11/19 (58%)
zf-H2C2_2 577..602 CDD:463886 20/24 (83%)
C2H2 Zn finger 593..613 CDD:275368 16/19 (84%)
zf-C2H2 623..645 CDD:395048 13/21 (62%)
C2H2 Zn finger 625..645 CDD:275368 13/19 (68%)
lambda-1 882..>929 CDD:212564 24/50 (48%)
SUF4-like 908..>955 CDD:411020 33/46 (72%)
C2H2 Zn finger 910..931 CDD:411020 14/20 (70%)
C2H2 Zn finger 910..930 CDD:275368 13/19 (68%)
C2H2 Zn finger 938..958 CDD:275368 14/19 (74%)
C2H2 Zn finger 938..955 CDD:411020 12/16 (75%)

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