DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment salr and znf568

DIOPT Version :10

Sequence 1:NP_523548.1 Gene:salr / 34568 FlyBaseID:FBgn0000287 Length:1267 Species:Drosophila melanogaster
Sequence 2:NP_001016087.1 Gene:znf568 / 548841 XenbaseID:XB-GENE-5723274 Length:497 Species:Xenopus tropicalis


Alignment Length:832 Identity:160/832 - (19%)
Similarity:222/832 - (26%) Gaps:411/832 - (49%)


- Green bases have known domain annotations that are detailed below.


  Fly   307 YASKEAQSRGEIFKHRCKYCGKIFGSYSALQIHLRSHTGERPFVCNVCGSKFTTKGNLKVHYQRH 371
            :...|..|..:.||  |..|||.|...:.|..|.:.||||:||.|:.||..||.|.:|:.|.:.|
 Frog     5 HPQSELHSAAKKFK--CPECGKRFLRKNELNTHWKFHTGEKPFTCSECGKSFTLKASLQNHLRIH 67

  Fly   372 TQIFPPMLLPPGVAPNVGHSGQGQVQGEQYPIRLPFAPPVAPVGQEQHQNQVEEPEEIRQEIPVP 436
            |                         ||:     |:.                            
 Frog    68 T-------------------------GEK-----PYT---------------------------- 74

  Fly   437 QAEDLSKPMVKEKEKSHSPVERVKTPKEVKTDAALPSSEKPE--KEISKPVVTSSRRNGSVRKRQ 499
                     ..|..||.|.:...:..:.:.|      .|||.  .|..|...||.          
 Frog    75 ---------CTECGKSFSDIGDFRKHQRIHT------GEKPYACSECGKKFTTSG---------- 114

  Fly   500 TSAVSPPQEDRERDLVEHLHI---AKLVRRSSASRESQPAEYSLAQMERIIDKSWEDLIEIDKTS 561
                         :|::|.|:   ||                                       
 Frog   115 -------------NLLQHQHVHTGAK--------------------------------------- 127

  Fly   562 ETSKLQQLVDNIENKLTDPNQCIFCQKVMSCRSSLQMHIRTHTGERPFRCKICGRAFATKGNLKA 626
                              |..|..|.|..:|.|.|.:|:||||||:||.|..||:.|..|..|:.
 Frog   128 ------------------PFTCRECGKSFTCSSHLSIHVRTHTGEKPFSCAECGKCFKVKSYLRI 174

  Fly   627 HMSIHKIKPPMRSQFKCPVCHQKFSNGIILQQHIRIHTMDDGSGGQGAPAANPGEAERLGIEDQN 691
            |.:.|..:.|    |.|..|.:.||....|..|.|:||               ||..        
 Frog   175 HQTTHTGEKP----FTCTECGKGFSAKSGLLTHQRLHT---------------GEKR-------- 212

  Fly   692 SNKSLGTSDTLDFSTTISDHSGQRSESSQGGDFDEFMTMDSTDDSRDNSSAATATPHPLERERDR 756
                        ||.|                                                 
 Frog   213 ------------FSCT------------------------------------------------- 216

  Fly   757 EKERERRIPNDCSDERSHSNPDLTGGRSESGEMPAMDLSSPSSNSGRIFATGLANGAAGGGSGNG 821
                      :|....:|.|..:...|..:||.|     ...:..|:.|.|              
 Frog   217 ----------ECGKRFTHKNTLVLHERFHTGEKP-----FTCTECGKGFIT-------------- 252

  Fly   822 GLPMLGMPMPPNLLLMAAAREEMHALGHAHAKFPLLPFGPLGFMGLHPPPNVCNLCFKMLPSLAA 886
                             .:..:.|...|...|    ||.             |..|.|:..|...
 Frog   253 -----------------VSFLKTHQKVHTGEK----PFS-------------CTECGKIFTSKKG 283

  Fly   887 LESHLQSEHAKEPAT-----------GHAQRPQ----------CSDAGSPYGAKLTLNPNLFAKK 930
            |..||::...::|.|           .|.:..|          |::....|..|.:|..:|    
 Frog   284 LNLHLRTHTGEKPFTCTECGKSFSCKSHLRSHQNVHTRSKVFKCTECDKCYATKQSLEYHL---- 344

  Fly   931 PPSSSSSSSGEKLPESSNPPFPAENPPATPIKEDPDQEQLMVEEGASAGEGSGTGATSNYPQEAG 995
                 |:.:||:       |||.                      ...|:|        :|....
 Frog   345 -----SAHTGER-------PFPC----------------------TECGKG--------FPNRHV 367

  Fly   996 DAEQSLMKMQLHAHRFPASPLDFQQALMSAGPPTSSLDPPVNNKHFCHVCRRNFSSSSALQIHMR 1060
            ..:.:|    :|.|..|.:                           |..|.:.|||.|.|..|.|
 Frog   368 LQKHTL----IHLHLKPFT---------------------------CGECEKCFSSKSHLNRHQR 401

  Fly  1061 THTGDKPFQCNVCQKAFTTKGNLKVHMGTHMWTNP--TSRRGRRMSLELPMR 1110
            .|||:|||.|..|.|.|..|.:||.||..|....|  .:..|:....|..:|
 Frog   402 VHTGEKPFTCTECGKGFFHKNHLKRHMIIHTGEKPFTCTECGKTFPYEKSLR 453

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
salrNP_523548.1 SUF4-like 320..>371 CDD:411020 22/50 (44%)
C2H2 Zn finger 323..344 CDD:411020 7/20 (35%)
C2H2 Zn finger 323..343 CDD:275368 7/19 (37%)
C2H2 Zn finger 351..371 CDD:411020 8/19 (42%)
C2H2 Zn finger 351..371 CDD:275368 8/19 (42%)
SUF4-like 583..>636 CDD:411020 23/52 (44%)
C2H2 Zn finger 583..604 CDD:411020 9/20 (45%)
C2H2 Zn finger 583..603 CDD:275368 8/19 (42%)
zf-H2C2_2 595..620 CDD:463886 14/24 (58%)
C2H2 Zn finger 611..631 CDD:411020 7/19 (37%)
C2H2 Zn finger 611..631 CDD:275368 7/19 (37%)
C2H2 Zn finger 643..663 CDD:275368 7/19 (37%)
lambda-1 1013..>1061 CDD:212564 8/47 (17%)
SUF4-like 1039..>1087 CDD:411020 22/47 (47%)
C2H2 Zn finger 1042..1063 CDD:411020 9/20 (45%)
C2H2 Zn finger 1042..1062 CDD:275368 9/19 (47%)
C2H2 Zn finger 1070..1090 CDD:275368 9/19 (47%)
C2H2 Zn finger 1070..1087 CDD:411020 7/16 (44%)
znf568NP_001016087.1 C2H2 Zn finger 19..39 CDD:275368 7/19 (37%)
C2H2 Zn finger 47..67 CDD:275368 8/19 (42%)
zf-H2C2_2 59..83 CDD:463886 10/90 (11%)
C2H2 Zn finger 75..95 CDD:275368 4/19 (21%)
zf-H2C2_2 87..112 CDD:463886 6/30 (20%)
C2H2 Zn finger 103..123 CDD:275368 7/42 (17%)
COG5048 127..>439 CDD:227381 111/596 (19%)
C2H2 Zn finger 131..151 CDD:275368 8/19 (42%)
C2H2 Zn finger 159..179 CDD:275368 7/19 (37%)
C2H2 Zn finger 187..207 CDD:275368 7/19 (37%)
C2H2 Zn finger 215..235 CDD:275368 5/78 (6%)
C2H2 Zn finger 243..263 CDD:275368 4/50 (8%)
C2H2 Zn finger 271..291 CDD:275368 7/19 (37%)
C2H2 Zn finger 299..319 CDD:275368 2/19 (11%)
C2H2 Zn finger 327..347 CDD:275368 6/28 (21%)
C2H2 Zn finger 355..375 CDD:275368 4/53 (8%)
C2H2 Zn finger 383..403 CDD:275368 9/19 (47%)
C2H2 Zn finger 411..431 CDD:275368 9/19 (47%)
SUF4-like 435..>484 CDD:411020 4/19 (21%)
C2H2 Zn finger 439..460 CDD:411020 3/15 (20%)
C2H2 Zn finger 439..459 CDD:275368 3/15 (20%)
C2H2 Zn finger 467..487 CDD:275368
C2H2 Zn finger 467..484 CDD:411020
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.