DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment salr and Cph

DIOPT Version :10

Sequence 1:NP_523548.1 Gene:salr / 34568 FlyBaseID:FBgn0000287 Length:1267 Species:Drosophila melanogaster
Sequence 2:NP_001356899.1 Gene:Cph / 31660 FlyBaseID:FBgn0029939 Length:1254 Species:Drosophila melanogaster


Alignment Length:1443 Identity:291/1443 - (20%)
Similarity:424/1443 - (29%) Gaps:538/1443 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 KELDADSNNNG----TEPQMEAEAVPESDTERETAEERGEEQEPENSNEALDLSLISSGGRESLP 108
            |.|..:..|.|    ..|||:.:|               ||..|        |||::.....|.|
  Fly    55 KVLQCNKENYGQCATQNPQMDRDA---------------EEGRP--------LSLVNRRPSISAP 96

  Fly   109 GSGHVSLEALQHTKVAVAQFAATAMAGNHQSADLAMV---------------QSTIFNVQRQHLM 158
            .||..|..|.....||.|..||.|.|....:|..:.:               .||          
  Fly    97 ISGRKSAPASAAAAVAAAAAAAAAAAAASSTASGSRIHTPPPSPADLLADGASST---------- 151

  Fly   159 QLQLIQH---------------LQSQLKRAEAAALGRHSHSDE--EEEEPEPEPEPKKQPTNG-L 205
            ..:|:..               |.|....:..||:.|.|..|.  |.||.:...:.:.||... :
  Fly   152 PKRLVDENDNTTPKDSETGATTLDSNAAPSSPAAIERQSSGDSSCEMEEQQDRQDKQSQPKQAKV 216

  Fly   206 KEELELEQGPESEQDQESRREEN------SKTDKRGTEDRKA-----EPEGYQSMMCDISSSLAS 259
            |:|...|:|....|:|:...:|.      :|..|....|.:|     ||..|....|....:.|.
  Fly   217 KQEPYDEEGVNHHQNQDDDDDEEMEERSLAKRPKMELVDAEANTVHTEPSNYTCSTCKTRYTSAW 281

  Fly   260 SIIT----NHDPPPAPNEPNCLEMLQRRTEEVLDSASQSLHAAQMQEEYSEYASKE-AQSRGEIF 319
            .:|.    :|........|.....|...|...|::::.:|.||......|..||.: |.|.....
  Fly   282 RLIQHVQHSHGVKIYVESPGGGATLTVATPAALNNSALALAAAAAAASASGLASPQPAVSPNPAV 346

  Fly   320 KHRCKYCGKIFGSYSALQIHLRSHTGERPFVCNVCGSKFTTKGNL-------------------- 364
            ....|....:..:.|.:.....|.|.....| |..|...:...::                    
  Fly   347 TSSAKRSSPLGAAGSTILSTSVSSTCSNSLV-NTSGGSISNTSSIGSPQQQQLQLQQQQAQQQQQ 410

  Fly   365 KVHYQ-------------RHTQIFPP-------------MLLPPG----------VAPNVG---- 389
            :|..|             ||..:.||             |.|||.          |||..|    
  Fly   411 RVQQQQRENLASAMAAGMRHHPLLPPPEAMHANPFQLLRMPLPPALAQAGNVVPTVAPLFGRPSP 475

  Fly   390 ---------------HSG----------------QGQV----------------------QGEQY 401
                           |.|                .|||                      :|...
  Fly   476 ADHYRMEQLVSEQFRHHGFNLAAAAAAAQAQFNANGQVVGGVVSGSGEPRPPSSSSSGSQRGSVP 540

  Fly   402 PIRLPFAPPVAPVGQEQHQNQVEEPEEIRQEIPVPQAEDLSKPMVKEKEKSHSPVERVKTPKEVK 466
            |..||  ||.....|:|.|.|.     ::|:......:.|.....:::.:..|..::..||..| 
  Fly   541 PAALP--PPSLSSQQQQQQQQA-----VQQQQQQGAQQQLQSAQQQQQSQQQSQQQQQITPGLV- 597

  Fly   467 TDAALPSSEKPE--------KEISKPVVTSSRRNGSVRKRQTSAVSPPQEDRERDLVEHLHIAKL 523
              .....|.|.|        :.:.:...|:|...||.  ..:|:.||.|:       :..|.|. 
  Fly   598 --GGAGGSLKLEPQQMDFYSQRLRQLAGTTSPGAGST--VNSSSPSPRQK-------QSPHFAS- 650

  Fly   524 VRRSSASRESQ------PAEYSLAQMERIIDKSWED------LIEIDKTSETSKLQQLVDNIENK 576
               .|.|::.|      |..:||...|::.|.|.|:      |....:::.|...:....:::..
  Fly   651 ---PSPSQQQQQQLATIPRPHSLTPPEKLGDASSENGSLGLILASTPRSASTPPSKTGDVSLQEP 712

  Fly   577 LTDPNQCIFCQKVMSCRSSLQMHIRTHTGERPFRCKICGRAFATKGNLKAHMSIHKIKPPMRSQF 641
            :.....|.:|.|.....::|.:|.||||||:|::|..|                         .|
  Fly   713 IAHCYSCSYCDKKFRFENNLIIHQRTHTGEKPYKCTAC-------------------------DF 752

  Fly   642 KCPVCH-QKFSNGIILQQHIRIH--------TMDDGSGGQGAPAANPGEAERLGIEDQN---SNK 694
            :|  .| ||      |.:|:|:|        ..|:...|..|.:....||:  ..||.|   |.:
  Fly   753 EC--SHIQK------LMKHMRVHRSPADDQDNQDNQDDGSNADSLETNEAD--NDEDPNPDESEE 807

  Fly   695 SLGTSDTLDFSTTISDHSGQRSESSQGGDFDEFMTMDSTDDSRDNSSAATATPHPLERERDREKE 759
            .||..|                 :...||.|    :|..|:..|.          ||...|.:.:
  Fly   808 ELGDGD-----------------NDPDGDGD----LDGEDEDEDE----------LEECEDMDYK 841

  Fly   760 RERRIPNDCSDERSHSNPDLT--GGRSESGE-MPAMDLSSPS----------SNSGRIFATGLAN 811
            .|....::..|.:|.| |..|  |..|..|| |....||:.:          ..|||..|...|.
  Fly   842 AEDLSVSNRIDGKSQS-PKTTSSGATSLVGELMDKFGLSNIAQYSEAYKQALQESGRKEAAAAAA 905

  Fly   812 GAAGGGSGN--GGLPMLGMPMPPNL--LLMAAAREEMHALGHAHAKFPLLPFGPLGFMGLHPPPN 872
            .||.....|  ||   .|.|:...|  |.:||.|                               
  Fly   906 AAAAAADNNNRGG---AGAPLSDKLNGLPVAALR------------------------------- 936

  Fly   873 VCNLCFKMLPSLAALESHLQSEHAKEPATGHAQRPQCSDAGSPYGAKLTLNPNLFAKKPPSSSSS 937
                              |:.|.||.  ....|:||  |.|:|                      
  Fly   937 ------------------LRDEFAKN--CNMFQQPQ--DGGAP---------------------- 957

  Fly   938 SSGEKLPESSNPPFPAENPPATPIKEDPDQEQLMVEEGASAGEGSGTGATSNYPQEAGD---AEQ 999
                    |..|.|   ||...|.:                       .:.....:.||   ..|
  Fly   958 --------SQVPLF---NPFPNPFE-----------------------LSKRMKMDGGDWWGMSQ 988

  Fly  1000 SLMKMQLHAHRFPASPLDFQQALMSAGPPTSSLDPPVNNKH------FCHVCRRNFSSSSALQIH 1058
            :|.:.:.........||       ..|...|.:..|:..|.      .|..|.:.|.:.|.|.:|
  Fly   989 ALHRNEALFENLKLKPL-------GLGGANSLIQGPLLKKESRQRNDTCEFCGKVFKNCSNLTVH 1046

  Fly  1059 MRTHTGDKPFQCNVCQKAFTTKGNLKVHMGTHMWTNPTSRRGR--------RMSLELPMRP-GPN 1114
            .|:|||:||::|.:|..|......|..||.||..|.....|.|        ..:||..||. ..|
  Fly  1047 RRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRTGKDVYRCRFCDMPFSVPSTLEKHMRKCVVN 1111

  Fly  1115 SG----------------------------------QGHPGSSAEQEFMQRRPELFFPYLPPFFN 1145
            .|                                  |.....:|:|...|::             
  Fly  1112 QGKAAAAANAVAAAQAAQAAAQHIQAAAQQAQAVQAQAVQAQAAQQSQQQQQ------------- 1163

  Fly  1146 GLPPKPGELSPGAFPNIPPPPFANGGKYPYPPGLLG------FPGFLAQHPYILERRSSSKSPTP 1204
                   :|||...... ||.|.:|.....|..:.|      .......||..|:..: ..|..|
  Fly  1164 -------QLSPMGVVGY-PPQFVSGHNLSLPGSVSGDNDSNASSSMTGVHPISLKEEAXLFSGFP 1220

  Fly  1205 EP-AQSPALREEE 1216
            .| |..|.|::.:
  Fly  1221 VPLAPPPPLQQHQ 1233

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
salrNP_523548.1 SUF4-like 320..>371 CDD:411020 9/83 (11%)
C2H2 Zn finger 323..344 CDD:411020 3/20 (15%)
C2H2 Zn finger 323..343 CDD:275368 2/19 (11%)
C2H2 Zn finger 351..371 CDD:411020 4/52 (8%)
C2H2 Zn finger 351..371 CDD:275368 4/52 (8%)
SUF4-like 583..>636 CDD:411020 14/52 (27%)
C2H2 Zn finger 583..604 CDD:411020 7/20 (35%)
C2H2 Zn finger 583..603 CDD:275368 6/19 (32%)
zf-H2C2_2 595..620 CDD:463886 11/24 (46%)
C2H2 Zn finger 611..631 CDD:411020 2/19 (11%)
C2H2 Zn finger 611..631 CDD:275368 2/19 (11%)
C2H2 Zn finger 643..663 CDD:275368 7/20 (35%)
lambda-1 1013..>1061 CDD:212564 12/53 (23%)
SUF4-like 1039..>1087 CDD:411020 17/53 (32%)
C2H2 Zn finger 1042..1063 CDD:411020 7/20 (35%)
C2H2 Zn finger 1042..1062 CDD:275368 7/19 (37%)
C2H2 Zn finger 1070..1090 CDD:275368 6/19 (32%)
C2H2 Zn finger 1070..1087 CDD:411020 4/16 (25%)
CphNP_001356899.1 zf-C2H2 717..739 CDD:395048 6/21 (29%)
C2H2 Zn finger 719..739 CDD:275368 6/19 (32%)
zf-H2C2_2 731..756 CDD:463886 13/51 (25%)
C2H2 Zn finger 747..767 CDD:275368 10/52 (19%)
zf-C2H2 1029..1050 CDD:395048 7/20 (35%)
C2H2 Zn finger 1030..1050 CDD:275368 7/19 (37%)
zf-H2C2_2 1042..1067 CDD:463886 11/24 (46%)
C2H2 Zn finger 1058..1078 CDD:275368 6/19 (32%)
C2H2 Zn finger 1088..1106 CDD:275368 3/17 (18%)

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